Aliases for LINC02269 Gene

Data sources for LINC02269 Gene:

Subcategory (RNA class) for LINC02269 Gene

lncRNA

Aliases for LINC02269 Gene

External Ids for LINC02269 Gene

Previous GeneCards Identifiers for LINC02269 Gene

  • GC04P173695

Summaries for LINC02269 Gene

GeneCards Summary for LINC02269 Gene

LINC02269 (Long Intergenic Non-Protein Coding RNA 2269) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02269 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02269 Gene

Genomics for LINC02269 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02269 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J173608 Enhancer 0.8 ENCODE 250.7 0.0 -46 0.2 FEZF1 IKZF1 ZNF217 ZIC2 FOXA2 KLF7 ZNF341 TAF9B SIN3A ZNF843 LINC02269 lnc-HAND2-4 HAND2 HAND2-AS1 FBXO8
GH04J173897 Promoter 0.3 EPDnew 250.1 +288.5 288451 0.1 LINC02269 piR-54987-100 ENSG00000250043 HAND2 FBXO8
GH04J173698 Enhancer 0.6 FANTOM5 Ensembl 6.7 +90.3 90329 0.6 JUND CREB1 EP300 LOC107986203 lnc-HAND2-3 LINC02269 piR-33730-069 HAND2 FBXO8
GH04J173680 Enhancer 0.3 VISTA 8.5 +73.7 73727 4.7 ATF2 PKNOX1 LINC02269 lnc-HAND2-3 RANP6 HAND2 FBXO8
GH04J173925 Enhancer 0.4 Ensembl 5.9 +316.3 316330 1 RCOR1 GATA2 CHD2 LINC02269 lnc-CEP44-8 lnc-FBXO8-8 LOC105377543 ENSG00000251216 FBXO8 HAND2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02269 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02269 Gene

Latest Assembly
chr4:173,608,771-174,083,078
(GRCh38/hg38)
Size:
474,308 bases
Orientation:
Plus strand

Previous Assembly
chr4:174,818,424-174,850,676
(GRCh37/hg19 by Entrez Gene)
Size:
32,253 bases
Orientation:
Plus strand

chr4:174,818,403-174,850,676
(GRCh37/hg19 by Ensembl)
Size:
32,274 bases
Orientation:
Plus strand

Genomic View for LINC02269 Gene

Genes around LINC02269 on UCSC Golden Path with GeneCards custom track
LINC02269 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC02269 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02269 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02269 Gene

Proteins for LINC02269 Gene

Post-translational modifications for LINC02269 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02269 Gene

Domains & Families for LINC02269 Gene

Gene Families for LINC02269 Gene

genes like me logo Genes that share domains with LINC02269: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02269 Gene

Function for LINC02269 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02269 Gene

Localization for LINC02269 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02269 Gene

Pathways & Interactions for LINC02269 Gene

PathCards logo

SuperPathways for LINC02269 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02269 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02269 Gene

Drugs & Compounds for LINC02269 Gene

No Compound Related Data Available

Transcripts for LINC02269 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02269 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000077758_9606 lncRNA 511 4

Ensembl: ENST00000509968 (view in UCSC) ,

LncBook: HSALNT0081041,

LNCipedia: LINC02269:7,

NONCODE: NONHSAT099304.2,

URS0000373903_9606 lncRNA 499 4

RefSeq: NR_146487,

Ensembl: ENST00000512263 (view in UCSC) ,

LNCipedia: LINC02269:9,

NONCODE: NONHSAT099306.2,

URS0000EF6E7D_9606 lncRNA 1388 1

Ensembl: ENST00000660497 (view in UCSC) ,

URS0000EF0DDE_9606 lncRNA 1269 1

Ensembl: ENST00000665324 (view in UCSC) ,

URS0000EEBE0A_9606 lncRNA 971 1

Ensembl: ENST00000656853 (view in UCSC) ,

LINC02269 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02269 Gene

No ASD Table

Relevant External Links for LINC02269 Gene

GeneLoc Exon Structure for
LINC02269

No data available for mRNA/cDNA for LINC02269 Gene

Expression for LINC02269 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02269 Gene

Orthologs for LINC02269 Gene

Evolution for LINC02269 Gene

ENSEMBL:
Gene Tree for LINC02269 (if available)
TreeFam:
Gene Tree for LINC02269 (if available)

No data available for Orthologs for LINC02269 Gene

Paralogs for LINC02269 Gene

No data available for Paralogs for LINC02269 Gene

Variants for LINC02269 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC02269 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for LINC02269 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02269

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02269 Gene

Disorders for LINC02269 Gene

Additional Disease Information for LINC02269

No disorders were found for LINC02269 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02269 Gene

Publications for LINC02269 Gene

  1. The CCND1 c.870G>A polymorphism is a risk factor for t(11;14)(q13;q32) multiple myeloma. (PMID: 23502783) Weinhold N … Hemminki K (Nature genetics 2013) 3

No data available for Mastermind for LINC02269 Gene

Products for LINC02269 Gene

Sources for LINC02269 Gene