LINC02268 Gene (RNA Gene)

Long Intergenic Non-Protein Coding RNA 2268

GC04M174095
GIFtS:
11

Aliases for LINC02268 Gene

Subcategory (RNA class) for LINC02268 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC02268 Gene

  • Long Intergenic Non-Protein Coding RNA 2268 2 3 5
  • LINC02268 2 168
  • HSALNG0038623 167
  • NONHSAG039371 92

External Ids for LINC02268 Gene

Summaries for LINC02268 Gene

GeneCards Summary for LINC02268 Gene

LINC02268 (Long Intergenic Non-Protein Coding RNA 2268) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02268 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02268 Gene

Genomics for LINC02268 Gene

GeneHancer (GH) Regulatory Elements for LINC02268 Gene

Promoters and enhancers for LINC02268 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH04J174120 Promoter/Enhancer 1.7 Ensembl ENCODE CraniofacialAtlas dbSUPER 34.9 +100.2 100197 1.2 CTCF NRF1 REST ZBTB26 HES1 RAD21 TRIM22 TEAD1 MCM3 MXI1 LINC02268 CEP44 HMGB2 ENSG00000261646 HAND2-AS1 ENSG00000250957 lnc-CEP44-2 lnc-CEP44-7
GH04J174110 Enhancer 0.5 dbSUPER 36.7 +108.7 108652 1.7 OSR2 WT1 TCF7L2 ZNF843 FEZF1 PRDM4 SP7 GLI2 LINC02268 lnc-CEP44-2 ENSG00000250957 lnc-CEP44-7
GH04J174121 Enhancer 0.3 dbSUPER 28.9 +97.6 97607 2.2 ZNF316 SCRT2 LINC02268 ENSG00000250957 lnc-CEP44-2 lnc-CEP44-7
GH04J174140 Enhancer 0.5 dbSUPER 18.2 +75.8 75781 7.7 GATA3 RCOR1 EZH2 CHD2 GATA2 POLR2A LINC02268 ENSG00000250957 lnc-CEP44-2 lnc-CEP44-7
GH04J174423 Promoter/Enhancer 1.2 Ensembl ENCODE 4.8 -203.1 -203141 1.1 TCF12 PHB2 AFF1 USF2 TOE1 MYC EP300 TAF9B OSR2 MIER1 MIR4276 LINC02268 lnc-HPGD-2 piR-48049-063
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02268 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02268 Gene

Genomic Locations for LINC02268 Gene
chr4:174,064,911-174,220,398
(GRCh38/hg38)
Size:
155,488 bases
Orientation:
Minus strand
chr4:175,015,811-175,141,549
(GRCh37/hg19)
Size:
125,739 bases
Orientation:
Minus strand

Genomic View for LINC02268 Gene

Genes around LINC02268 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02268 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02268 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LINC02268 Gene

Proteins for LINC02268 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LINC02268 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02268 Gene

Domains & Families for LINC02268 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02268 Gene

Function for LINC02268 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LINC02268 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02268 Gene

Localization for LINC02268 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02268 Gene

Pathways & Interactions for LINC02268 Gene

PathCards logo

SuperPathways for LINC02268 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC02268 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02268 Gene

Drugs & Compounds for LINC02268 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LINC02268 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for LINC02268 Gene

12 RNACentral transcripts :
1 REFSEQ mRNAs :
2 NCBI additional mRNA sequence :
7 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
2 NONCODE transcripts :
3 LncBook transcripts :
7 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02268 Gene

No ASD Table

Relevant External Links for LINC02268 Gene

GeneLoc Exon Structure for
LINC02268

Expression for LINC02268 Gene

Products:

  1. Primer

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC02268

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02268 Gene

Orthologs for LINC02268 Gene

Evolution for LINC02268 Gene

ENSEMBL:
Gene Tree for LINC02268 (if available)
TreeFam:
Gene Tree for LINC02268 (if available)

No data available for Orthologs for LINC02268 Gene

Paralogs for LINC02268 Gene

No data available for Paralogs for LINC02268 Gene

Variants for LINC02268 Gene

Additional dbSNP identifiers (rs#s) for LINC02268 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC02268 Gene

Variant ID Type Subtype PubMed ID
esv1011374 CNV deletion 20482838
esv2678587 CNV deletion 23128226
esv2728764 CNV deletion 23290073
esv2728765 CNV deletion 23290073
nsv1117134 CNV deletion 24896259
nsv596234 CNV gain 21841781
nsv822842 CNV loss 20364138
nsv830155 CNV gain 17160897

Additional Variant Information for LINC02268 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02268

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC02268 Gene

Disorders for LINC02268 Gene

Additional Disease Information for LINC02268

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for LINC02268 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02268 Gene

Publications for LINC02268 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 54
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 54

No data available for Mastermind for LINC02268 Gene

Products for LINC02268 Gene

Sources for LINC02268 Gene