Aliases for LINC02268 Gene

Data sources for LINC02268 Gene:

Subcategory (RNA class) for LINC02268 Gene

lncRNA

Aliases for LINC02268 Gene

External Ids for LINC02268 Gene

Previous GeneCards Identifiers for LINC02268 Gene

  • GC04M174095

Summaries for LINC02268 Gene

GeneCards Summary for LINC02268 Gene

LINC02268 (Long Intergenic Non-Protein Coding RNA 2268) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02268 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02268 Gene

Genomics for LINC02268 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02268 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J174120 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 284.9 +101.0 100980 1 MNT IKZF1 HES1 CTCF BHLHE40 MCM3 REST NBN TRIM22 SMC3 LINC02268 CEP44 HMGB2 ENSG00000261646 HAND2-AS1 lnc-CEP44-2 LOC107986204 HSALNG0038627 FBXO8 lnc-CEP44-7
GH04J174220 Promoter 0.3 EPDnew 250.7 +0.9 871 0.1 LINC02268 FBXO8 CEP44 ENSG00000251213 HSALNG0038628 HAND2
GH04J174110 Enhancer 0.5 dbSUPER 36.7 +109.5 109535 1.7 FEZF1 ZNF843 SP7 PRDM4 OSR2 WT1 LINC02268 LOC107986204 lnc-CEP44-2 HSALNG0038627 lnc-CEP44-7 FBXO8 HAND2
GH04J174140 Enhancer 0.5 dbSUPER 18.2 +76.7 76664 7.7 RCOR1 GATA2 EZH2 POLR2A CHD2 LINC02268 HSALNG0038627 ENSG00000250957 LOC107986204 lnc-CEP44-2 FBXO8 lnc-CEP44-7 HAND2
GH04J174423 Promoter/Enhancer 1.2 Ensembl ENCODE 4.8 -202.3 -202258 1.1 IKZF1 BHLHE40 CEBPB ARNT ZNF395 VEZF1 NBN EP300 TAL1 TAF9B MIR4276 CEP44 FBXO8 ENSG00000261646 LINC02268 HSALNG0038644 lnc-HPGD-2 piR-48049-063 HPGD
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02268 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02268 Gene

Latest Assembly
chr4:174,058,775-174,221,281
(GRCh38/hg38)
Size:
162,507 bases
Orientation:
Minus strand

Previous Assembly
chr4:175,015,811-175,141,549
(GRCh37/hg19 by Entrez Gene)
Size:
125,739 bases
Orientation:
Minus strand

chr4:175,015,811-175,141,549
(GRCh37/hg19 by Ensembl)
Size:
125,739 bases
Orientation:
Minus strand

Genomic View for LINC02268 Gene

Genes around LINC02268 on UCSC Golden Path with GeneCards custom track
LINC02268 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC02268 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02268 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02268 Gene

Proteins for LINC02268 Gene

Post-translational modifications for LINC02268 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02268 Gene

Domains & Families for LINC02268 Gene

Gene Families for LINC02268 Gene

genes like me logo Genes that share domains with LINC02268: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02268 Gene

Function for LINC02268 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02268 Gene

Localization for LINC02268 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02268 Gene

Pathways & Interactions for LINC02268 Gene

PathCards logo

SuperPathways for LINC02268 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02268 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02268 Gene

Drugs & Compounds for LINC02268 Gene

No Compound Related Data Available

Transcripts for LINC02268 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02268 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00001E60D9_9606 lncRNA 1328 4

RefSeq: NR_125896,

Ensembl: ENST00000515444 (view in UCSC) ,

LNCipedia: LINC02268:9,

NONCODE: NONHSAT099311.2,

URS00003165A0_9606 lncRNA 600 3

Ensembl: ENST00000503140 (view in UCSC) ,

LNCipedia: LINC02268:15,

NONCODE: NONHSAT099312.2,

URS0000EEC12C_9606 lncRNA 2468 1

Ensembl: ENST00000671681 (view in UCSC) ,

URS0000EF34D4_9606 lncRNA 2003 1

Ensembl: ENST00000670219 (view in UCSC) ,

URS0000EEC688_9606 lncRNA 752 1

Ensembl: ENST00000662272 (view in UCSC) ,

LINC02268 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02268 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02268 Gene

No ASD Table

Relevant External Links for LINC02268 Gene

GeneLoc Exon Structure for
LINC02268

Expression for LINC02268 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC02268

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02268 Gene

Orthologs for LINC02268 Gene

Evolution for LINC02268 Gene

ENSEMBL:
Gene Tree for LINC02268 (if available)
TreeFam:
Gene Tree for LINC02268 (if available)

No data available for Orthologs for LINC02268 Gene

Paralogs for LINC02268 Gene

No data available for Paralogs for LINC02268 Gene

Variants for LINC02268 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC02268 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LINC02268 Gene

Variant ID Type Subtype PubMed ID
esv1011374 CNV deletion 20482838
esv2678587 CNV deletion 23128226
esv2728764 CNV deletion 23290073
esv2728765 CNV deletion 23290073
nsv1117134 CNV deletion 24896259
nsv596234 CNV gain 21841781
nsv822842 CNV loss 20364138
nsv830155 CNV gain 17160897

Additional Variant Information for LINC02268 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02268

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC02268 Gene

Disorders for LINC02268 Gene

Additional Disease Information for LINC02268

No disorders were found for LINC02268 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02268 Gene

Publications for LINC02268 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

No data available for Mastermind for LINC02268 Gene

Products for LINC02268 Gene

Sources for LINC02268 Gene