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Aliases for LINC02265 Gene

Subcategory (RNA class) for LINC02265 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC02265 Gene

  • Long Intergenic Non-Protein Coding RNA 2265 2 3 5

External Ids for LINC02265 Gene

Summaries for LINC02265 Gene

GeneCards Summary for LINC02265 Gene

LINC02265 (Long Intergenic Non-Protein Coding RNA 2265) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC02265 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC02265 Gene

Genomics for LINC02265 Gene

GeneHancer (GH) Regulatory Elements for LINC02265 Gene

Promoters and enhancers for LINC02265 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J040298 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 650.7 -1.6 -1575 15.1 HDGF PKNOX1 FOXA2 SMAD1 SIN3A ZNF2 IRF4 ZNF207 ZNF143 JUNB LINC02265 N4BP2 PDS5A ZBTB12BP RHOH CHRNA9 LOC344967 RFC1 RBM47 ENSG00000250338
GH04J040314 Promoter/Enhancer 1.7 Ensembl ENCODE dbSUPER 0.4 +9.2 9188 4.6 PKNOX1 SMAD1 ARNT SIN3A YBX1 ZNF2 IRF4 YY1 ZNF143 FOS LOC344967 N4BP2 RNU7-74P LINC02265 CHRNA9
GH04J040292 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -14.6 -14584 0.4 PKNOX1 ATF1 ARNT ETS1 TCF12 ZNF766 E2F8 ZNF143 ATF7 NCOA1 PDS5A RFC1 N4BP2 ENSG00000250906 RBM47 LINC02265 ENSG00000250338
GH04J040288 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -16.8 -16824 3.2 PKNOX1 ATF1 ARNT NCOA2 TCF12 ATF7 RUNX3 NCOA1 REST MBD2 RHOH LINC02265 ENSG00000250338
GH04J040325 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.4 +18.4 18415 0.4 CTCF ATF1 NFIB JUN EBF1 ZNF2 IRF4 BRCA1 RAD21 RFX5 N4BP2 LOC344967 RBM47 RNU7-74P CHRNA9 LINC02265
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02265 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02265 Gene

Genomic Locations for LINC02265 Gene
chr4:40,307,185-40,330,419
(GRCh38/hg38)
Size:
23,235 bases
Orientation:
Plus strand
chr4:40,318,502-40,332,436
(GRCh37/hg19)
Size:
13,935 bases
Orientation:
Plus strand

Genomic View for LINC02265 Gene

Genes around LINC02265 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02265 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02265 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02265 Gene

Proteins for LINC02265 Gene

Post-translational modifications for LINC02265 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02265 Gene

Domains & Families for LINC02265 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC02265 Gene

Function for LINC02265 Gene

Phenotypes From GWAS Catalog for LINC02265 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02265 Gene

Localization for LINC02265 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02265 Gene

Pathways & Interactions for LINC02265 Gene

SuperPathways for LINC02265 Gene

No Data Available

Interacting Proteins for LINC02265 Gene

Gene Ontology (GO) - Biological Process for LINC02265 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02265 Gene

Drugs & Compounds for LINC02265 Gene

No Compound Related Data Available

Transcripts for LINC02265 Gene

mRNA/cDNA for LINC02265 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(3) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02265 Gene

No ASD Table

Relevant External Links for LINC02265 Gene

GeneLoc Exon Structure for
LINC02265
ECgene alternative splicing isoforms for
LINC02265

Expression for LINC02265 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02265 Gene

Orthologs for LINC02265 Gene

Evolution for LINC02265 Gene

ENSEMBL:
Gene Tree for LINC02265 (if available)
TreeFam:
Gene Tree for LINC02265 (if available)

No data available for Orthologs for LINC02265 Gene

Paralogs for LINC02265 Gene

No data available for Paralogs for LINC02265 Gene

Variants for LINC02265 Gene

Sequence variations from dbSNP and Humsavar for LINC02265 Gene

SNP ID Clin Chr 04 pos Variation AA Info Type
rs1000043146 -- 40,306,352(+) G/A upstream_transcript_variant
rs1000110754 -- 40,309,741(+) G/A genic_upstream_transcript_variant, intron_variant
rs1000167846 -- 40,322,066(+) G/A intron_variant
rs10001727 -- 40,327,147(+) G/A intron_variant
rs1000365219 -- 40,328,054(+) G/A intron_variant

Additional Variant Information for LINC02265 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02265

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02265 Gene

Disorders for LINC02265 Gene

Additional Disease Information for LINC02265

No disorders were found for LINC02265 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02265 Gene

Publications for LINC02265 Gene

No publications were found for LINC02265 Gene.

Products for LINC02265 Gene

Sources for LINC02265 Gene

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