Aliases for LINC02258 Gene

Subcategory (RNA class) for LINC02258 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC02258 Gene

  • Long Intergenic Non-Protein Coding RNA 2258 2 3 5
  • LINC02258 2 5 165
  • RP11-248E9.5 2 3
  • NONHSAG011848.2 91
  • HSALNG0092867 164

External Ids for LINC02258 Gene

Summaries for LINC02258 Gene

GeneCards Summary for LINC02258 Gene

LINC02258 (Long Intergenic Non-Protein Coding RNA 2258) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC02258 include Pneumonia.

Additional gene information for LINC02258 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02258 Gene

Genomics for LINC02258 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02258 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J087779 Enhancer 0.6 ENCODE 0.4 +10.4 10387 0.2 FOXA1 REST CEBPB SP1 ATF3 NR3C1 JUND EP300 FOSL2 PRDM1 lnc-C12orf50-6 LINC02258 C12orf29 MGAT4C
GH12J087755 Enhancer 0.5 ENCODE 0.4 -12.3 -12331 2.3 CEBPB SP1 FOS EP300 FOSL2 BCL3 NR3C1 ENSG00000258173 LINC02258 C12orf29 MGAT4C
GH12J087797 Enhancer 0.5 Ensembl 0.3 +28.4 28389 0.4 SP1 JUND EP300 FOSL2 PRDM1 GATA3 MKRN9P ENSG00000257940 LINC02258 C12orf29 MGAT4C
GH12J087798 Enhancer 0.4 Ensembl 0.3 +27.1 27089 0.2 FOXA1 GATA3 JUND MKRN9P ENSG00000257940 LINC02258 C12orf29 MGAT4C
GH12J087795 Enhancer 0.3 Ensembl 0.3 +26.3 26289 0.2 ATF7 ATF2 MKRN9P ENSG00000257940 LINC02258 C12orf29 MGAT4C
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02258 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02258 Gene

Genomic Locations for LINC02258 Gene
chr12:87,768,812-87,805,749
(GRCh38/hg38)
Size:
36,938 bases
Orientation:
Plus strand
chr12:88,189,510-88,195,805
(GRCh37/hg19)
Size:
6,296 bases
Orientation:
Plus strand

Genomic View for LINC02258 Gene

Genes around LINC02258 on UCSC Golden Path with GeneCards custom track
LINC02258 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC02258 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02258 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02258 Gene

Proteins for LINC02258 Gene

Post-translational modifications for LINC02258 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02258 Gene

Domains & Families for LINC02258 Gene

Gene Families for LINC02258 Gene

genes like me logo Genes that share domains with LINC02258: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02258 Gene

Function for LINC02258 Gene

Phenotypes From GWAS Catalog for LINC02258 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02258 Gene

Localization for LINC02258 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02258 Gene

Pathways & Interactions for LINC02258 Gene

PathCards logo

SuperPathways for LINC02258 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02258 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02258 Gene

Drugs & Compounds for LINC02258 Gene

No Compound Related Data Available

Transcripts for LINC02258 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02258 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000405F58_9606 lncRNA 777 4

Ensembl: ENST00000551280 (view in UCSC) ,

LncBook: HSALNT0192459,

LNCipedia: LINC02258:3,

NONCODE: NONHSAT029775.2,

URS0000BC4435_9606 lncRNA 495 2

HGNC: 53165,

RefSeq: NR_149056,

LINC02258 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02258 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02258 Gene

No ASD Table

Relevant External Links for LINC02258 Gene

GeneLoc Exon Structure for
LINC02258

Expression for LINC02258 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02258 Gene

Orthologs for LINC02258 Gene

Evolution for LINC02258 Gene

ENSEMBL:
Gene Tree for LINC02258 (if available)
TreeFam:
Gene Tree for LINC02258 (if available)

No data available for Orthologs for LINC02258 Gene

Paralogs for LINC02258 Gene

No data available for Paralogs for LINC02258 Gene

Variants for LINC02258 Gene

Additional dbSNP identifiers (rs#s) for LINC02258 Gene

Additional Variant Information for LINC02258 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02258

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02258 Gene

Disorders for LINC02258 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LINC02258 Gene - From: LncRNADisease, DISEASES, and GeneCards

Disorder Aliases PubMed IDs
pneumonia
  • acute pneumonia
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC02258

genes like me logo Genes that share disorders with LINC02258: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC02258 Gene

Publications for LINC02258 Gene

  1. Identification of Potential Key Long Non-Coding RNAs and Target Genes Associated with Pneumonia Using Long Non-Coding RNA Sequencing (lncRNA-Seq): A Preliminary Study. (PMID: 27663962) Huang S … Li TS (Medical science monitor : international medical journal of experimental and clinical research 2016) 2 3

Products for LINC02258 Gene

Sources for LINC02258 Gene