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Aliases for LINC02258 Gene
Subcategory (RNA class) for LINC02258 Gene
lncRNA
Number of RNA Genes sources:
3 / 17
Aliases for LINC02258 Gene
External Ids for LINC02258 Gene
- HGNC: 53165
- Entrez Gene: 110806294
- Ensembl: ENSG00000257912
Summaries for LINC02258 Gene
GeneCards Summary for LINC02258 Gene
LINC02258 (Long Intergenic Non-Protein Coding RNA 2258) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC02258 include Pneumonia.
Additional gene information for LINC02258 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02258 Gene
Genomics for LINC02258 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for LINC02258 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH12J087779 | Enhancer | 0.6 | ENCODE | 0.4 | +10.4 | 10387 | 0.2 | FOXA1 REST CEBPB SP1 ATF3 NR3C1 JUND EP300 FOSL2 PRDM1 | lnc-C12orf50-6 LINC02258 C12orf29 MGAT4C | |
| GH12J087755 | Enhancer | 0.5 | ENCODE | 0.4 | -12.3 | -12331 | 2.3 | CEBPB SP1 FOS EP300 FOSL2 BCL3 NR3C1 | ENSG00000258173 LINC02258 C12orf29 MGAT4C | |
| GH12J087797 | Enhancer | 0.5 | Ensembl | 0.3 | +28.4 | 28389 | 0.4 | SP1 JUND EP300 FOSL2 PRDM1 GATA3 | MKRN9P ENSG00000257940 LINC02258 C12orf29 MGAT4C | |
| GH12J087798 | Enhancer | 0.4 | Ensembl | 0.3 | +27.1 | 27089 | 0.2 | FOXA1 GATA3 JUND | MKRN9P ENSG00000257940 LINC02258 C12orf29 MGAT4C | |
| GH12J087795 | Enhancer | 0.3 | Ensembl | 0.3 | +26.3 | 26289 | 0.2 | ATF7 ATF2 | MKRN9P ENSG00000257940 LINC02258 C12orf29 MGAT4C |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LINC02258 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for LINC02258 Gene
Genomic Locations for LINC02258 Gene
- chr12:87,768,812-87,805,749
- (GRCh38/hg38)
- Size:
- 36,938 bases
- Orientation:
- Plus strand
- chr12:88,189,510-88,195,805
- (GRCh37/hg19)
- Size:
- 6,296 bases
- Orientation:
- Plus strand
Genomic View for LINC02258 Gene
Genes around LINC02258 on UCSC Golden Path with GeneCards custom track
LINC02258 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
- Cytogenetic band:
-
- 12q21.32 by HGNC
- 12q21.32 by Entrez Gene
- 12q21.32 by Ensembl
LINC02258 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LINC02258 Gene
Proteins for LINC02258 Gene
Post-translational modifications for LINC02258 Gene
No Post-translational modifications
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LINC02258
- Origene Custom Protein Services for LINC02258
No data available for DME Specific Peptides for LINC02258 Gene
Domains & Families for LINC02258 Gene
Gene Families for LINC02258 Gene
No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02258 Gene
Function for LINC02258 Gene
Phenotypes From GWAS Catalog for LINC02258 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
CRISPR Products
- Browse CRISPR knockouts for LINC02258
miRNA Products
Inhibitory RNA Products
Clone Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02258 Gene
Localization for LINC02258 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02258 Gene
Transcripts for LINC02258 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02258 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS0000405F58_9606 | lncRNA | 777 | 4 |
Ensembl: ENST00000551280 (view in UCSC) , LncBook: HSALNT0192459, LNCipedia: LINC02258:3, NONCODE: NONHSAT029775.2, |
| URS0000BC4435_9606 | lncRNA | 495 | 2 |
HGNC: 53165, RefSeq: NR_149056, |
LINC02258 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for LINC02258 Gene
- 1 NCBI additional mRNA sequence :
CRISPR Products
- Browse CRISPR knockouts for LINC02258
miRNA Products
Inhibitory RNA Products
Clone Products
Relevant External Links for LINC02258 Gene
- GeneLoc Exon Structure for
- LINC02258
Expression for LINC02258 Gene
No Expression Related Data Available
Primer Products
No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02258 Gene
Orthologs for LINC02258 Gene
No data available for Orthologs for LINC02258 Gene
Paralogs for LINC02258 Gene
No data available for Paralogs for LINC02258 Gene
Variants for LINC02258 Gene
Additional Variant Information for LINC02258 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- LINC02258
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02258 Gene
Disorders for LINC02258 Gene
Search LINC02258 in MalaCards
View complete list of genes associated with diseases
Additional Disease Information for LINC02258
No data available for UniProtKB/Swiss-Prot and Genatlas for LINC02258 Gene
Publications for LINC02258 Gene
- Identification of Potential Key Long Non-Coding RNAs and Target Genes Associated with Pneumonia Using Long Non-Coding RNA Sequencing (lncRNA-Seq): A Preliminary Study. (PMID: 27663962) Huang S … Li TS (Medical science monitor : international medical journal of experimental and clinical research 2016) 2 3
Products for LINC02258 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LINC02258
- Origene Custom Protein Services for LINC02258
- Browse OriGene Inhibitory RNA Products For LINC02258
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for LINC02258
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For LINC02258
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for LINC02258
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for LINC02258
- Search GeneCopoeia for miRNA 3'UTR Target clone products for LINC02258
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for LINC02258
Sources for LINC02258 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) Genetics Home Reference
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNACentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Signalway Antibody
- (175) Open Targets Platform
- (176) 5SRRNADB
- (177) snoDB
- (178) MirGeneDB