LINC02245 Gene (RNA Gene)

Long Intergenic Non-Protein Coding RNA 2245

GC02M064902
GIFtS:
10
See more...

Aliases for LINC02245 Gene

Subcategory (RNA class) for LINC02245 Gene

lncRNA

Number of RNA Genes sources:

4 / 17

Aliases for LINC02245 Gene

  • Long Intergenic Non-Protein Coding RNA 2245 2 3 5
  • Lnc-SERTAD2-3 2 3 165
  • LINC02245 2 5
  • NONHSAG027985.2 91
  • NONHSAG027974.2 91
  • HSALNG0015506 164
  • HSALNG0015512 164
  • Lnc-RAB1A-1 165
  • AC007386.2 2

External Ids for LINC02245 Gene

Summaries for LINC02245 Gene

GeneCards Summary for LINC02245 Gene

LINC02245 (Long Intergenic Non-Protein Coding RNA 2245) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02245 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02245 Gene

Genomics for LINC02245 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for LINC02245 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02245 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02245 Gene

Genomic Locations for LINC02245 Gene
chr2:64,901,306-65,056,196
(GRCh38/hg38)
Size:
154,891 bases
Orientation:
Minus strand
chr2:65,128,974-65,159,581
(GRCh37/hg19)
Size:
30,608 bases
Orientation:
Minus strand

Genomic View for LINC02245 Gene

Genes around LINC02245 on UCSC Golden Path with GeneCards custom track
LINC02245 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC02245 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02245 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LINC02245 Gene

Proteins for LINC02245 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LINC02245 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02245 Gene

Domains & Families for LINC02245 Gene

Gene Families for LINC02245 Gene

HGNC:
genes like me logo Genes that share domains with LINC02245: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02245 Gene

Function for LINC02245 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LINC02245 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02245 Gene

Localization for LINC02245 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02245 Gene

Pathways & Interactions for LINC02245 Gene

PathCards logo

SuperPathways for LINC02245 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02245 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02245 Gene

Drugs & Compounds for LINC02245 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LINC02245 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02245 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000042883E_9606 lncRNA 2928 3

Ensembl: ENST00000449259 (view in UCSC) ,

LNCipedia: lnc-SERTAD2-3:1,

NONCODE: NONHSAT071138.2,

URS000075C780_9606 lncRNA 3029 2

HGNC: 53134,

RefSeq: NR_036586,

URS0000EEB1C5_9606 lncRNA 2026 1

Ensembl: ENST00000653778 (view in UCSC) ,

URS0000EED34C_9606 lncRNA 1433 1

Ensembl: ENST00000659575 (view in UCSC) ,

URS0000EF502B_9606 lncRNA 1409 1

Ensembl: ENST00000669631 (view in UCSC) ,

LINC02245 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02245 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02245 Gene

No ASD Table

Relevant External Links for LINC02245 Gene

GeneLoc Exon Structure for
LINC02245

Expression for LINC02245 Gene

Products:

  1. Primer

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC02245

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02245 Gene

Orthologs for LINC02245 Gene

Evolution for LINC02245 Gene

ENSEMBL:
Gene Tree for LINC02245 (if available)
TreeFam:
Gene Tree for LINC02245 (if available)

No data available for Orthologs for LINC02245 Gene

Paralogs for LINC02245 Gene

No data available for Paralogs for LINC02245 Gene

Variants for LINC02245 Gene

Additional dbSNP identifiers (rs#s) for LINC02245 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC02245 Gene

Variant ID Type Subtype PubMed ID
esv1927164 CNV deletion 18987734
esv2002191 CNV deletion 18987734
esv2174309 CNV deletion 18987734
nsv458108 CNV loss 19166990
nsv582127 CNV gain 21841781
nsv582129 CNV loss 21841781

Additional Variant Information for LINC02245 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02245

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC02245 Gene

Disorders for LINC02245 Gene

Additional Disease Information for LINC02245

ATLAS of Genetics and Cytogenetics in Oncology and Haematology
Open Targets Platform

No disorders were found for LINC02245 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02245 Gene

Publications for LINC02245 Gene

  1. Super-lncRNAs: identification of lncRNAs that target super-enhancers via RNA:DNA:DNA triplex formation. (PMID: 28839111) Soibam B (RNA (New York, N.Y.) 2017) 2 3
  2. lncRNAs as Novel Indicators of Patients' Prognosis in Stage I Epithelial Ovarian Cancer: A Retrospective and Multicentric Study. (PMID: 27827314) Martini P … Romualdi C (Clinical cancer research : an official journal of the American Association for Cancer Research 2017) 2 3
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

ExternalLinks

View latest publications for LINC02245 gene in Mastermind

Products for LINC02245 Gene

Sources for LINC02245 Gene