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Aliases for LINC02243 Gene

Subcategory (RNA class) for LINC02243 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC02243 Gene

  • Long Intergenic Non-Protein Coding RNA 2243 2 3 5

External Ids for LINC02243 Gene

Summaries for LINC02243 Gene

GeneCards Summary for LINC02243 Gene

LINC02243 (Long Intergenic Non-Protein Coding RNA 2243) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC02243 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC02243 Gene

Genomics for LINC02243 Gene

GeneHancer (GH) Regulatory Elements for LINC02243 Gene

Promoters and enhancers for LINC02243 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XI134947 Enhancer 1.1 Ensembl ENCODE 550.8 -0.3 -260 3.1 HDAC1 PKNOX1 FOXA2 RARA RFX5 ZEB1 ZNF366 RCOR1 FOS CREM LINC02243 RTL8B GC0XM134919 RNU6-616P
GH0XI134945 Enhancer 0.3 ENCODE 0.8 -3.0 -2950 1.8 ZNF121 SAGE4P RTL8B LINC02243 GC0XM134919 RNU6-616P
GH0XI134935 Enhancer 0.6 Ensembl ENCODE 0.4 -13.1 -13140 1.8 SOX13 ZNF366 RTL8B LINC02243 GC0XM134919 RNU6-616P
GH0XI134931 Enhancer 0.6 ENCODE 0.4 -16.1 -16140 2.9 SOX13 JUND FOXA2 SAP130 GLIS1 TCF7 MIER2 REST SMIM10 GC0XM134919 RNU6-616P LINC02243
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC02243 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02243 Gene

Genomic Locations for LINC02243 Gene
chrX:134,949,549-134,953,382
(GRCh38/hg38)
Size:
3,834 bases
Orientation:
Plus strand
chrX:134,083,579-134,087,412
(GRCh37/hg19)

Genomic View for LINC02243 Gene

Genes around LINC02243 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02243 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02243 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02243 Gene

Proteins for LINC02243 Gene

Post-translational modifications for LINC02243 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02243 Gene

Domains & Families for LINC02243 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC02243 Gene

Function for LINC02243 Gene

Phenotypes for LINC02243 Gene

GenomeRNAi human phenotypes for LINC02243:
genes like me logo Genes that share phenotypes with LINC02243: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02243 Gene

Localization for LINC02243 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02243 Gene

Pathways & Interactions for LINC02243 Gene

SuperPathways for LINC02243 Gene

No Data Available

Interacting Proteins for LINC02243 Gene

Gene Ontology (GO) - Biological Process for LINC02243 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02243 Gene

Drugs & Compounds for LINC02243 Gene

No Compound Related Data Available

Transcripts for LINC02243 Gene

mRNA/cDNA for LINC02243 Gene

(2) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02243 Gene

No ASD Table

Relevant External Links for LINC02243 Gene

GeneLoc Exon Structure for
LINC02243
ECgene alternative splicing isoforms for
LINC02243

Expression for LINC02243 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02243 Gene

Orthologs for LINC02243 Gene

Evolution for LINC02243 Gene

ENSEMBL:
Gene Tree for LINC02243 (if available)
TreeFam:
Gene Tree for LINC02243 (if available)

No data available for Orthologs for LINC02243 Gene

Paralogs for LINC02243 Gene

No data available for Paralogs for LINC02243 Gene

Variants for LINC02243 Gene

Sequence variations from dbSNP and Humsavar for LINC02243 Gene

SNP ID Clin Chr 0X pos Variation AA Info Type
rs1000224633 -- 134,950,411(+) T/A non_coding_transcript_variant
rs1000296746 -- 134,950,027(+) C/T intron_variant
rs1001082760 -- 134,953,797(+) G/A downstream_transcript_variant
rs1001133555 -- 134,953,252(+) T/ non_coding_transcript_variant
rs1001180262 -- 134,952,062(+) G/A intron_variant

Additional Variant Information for LINC02243 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02243

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02243 Gene

Disorders for LINC02243 Gene

Additional Disease Information for LINC02243

No disorders were found for LINC02243 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02243 Gene

Publications for LINC02243 Gene

  1. Identification of long noncoding RNAs for the detection of early stage lung squamous cell carcinoma by microarray analysis. (PMID: 28076325) Cheng Z … Mao H (Oncotarget 2017) 2 3 58
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for LINC02243 Gene

Sources for LINC02243 Gene

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