Aliases for LINC02233 Gene

Data sources for LINC02233 Gene:

Subcategory (RNA class) for LINC02233 Gene

lncRNA

Aliases for LINC02233 Gene

External Ids for LINC02233 Gene

Summaries for LINC02233 Gene

GeneCards Summary for LINC02233 Gene

LINC02233 (Long Intergenic Non-Protein Coding RNA 2233) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02233 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02233 Gene

Genomics for LINC02233 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02233 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J159777 Promoter 0.3 EPDnew 250.7 +0.7 700 0.1 LINC02233 RF00017-4438 LOC107986324 HSALNG0038202 RAPGEF2
GH04J159764 Enhancer 0.4 Ensembl 0.4 +13.7 13721 1.5 CTCF RAD21 SMC3 ZNF654 RF00017-4438 LINC02233 LOC107986324 HSALNG0038202 RAPGEF2
GH04J159735 Enhancer 0.5 Ensembl ENCODE 0.3 +42.4 42353 1.6 TAF1 EZH2 piR-37611-009 LINC02233 HSALNG0038215 LOC107986324 HSALNG0038202 RAPGEF2
GH04J159770 Enhancer 0.3 Ensembl 0.4 +8.1 8053 0.2 JUND LINC02233 RF00017-4438 LOC107986324 HSALNG0038202 RAPGEF2
GH04J159767 Enhancer 0.2 Ensembl 0.4 +10.4 10447 0.6 RF00017-4438 LINC02233 LOC107986324 HSALNG0038202 RAPGEF2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02233 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02233 Gene

Latest Assembly
chr4:159,662,490-159,778,554
(GRCh38/hg38)
Size:
116,065 bases
Orientation:
Minus strand

Previous Assembly
chr4:160,587,655-160,698,936
(GRCh37/hg19 by Entrez Gene)
Size:
111,282 bases
Orientation:
Minus strand

chr4:160,587,655-160,698,936
(GRCh37/hg19 by Ensembl)
Size:
111,282 bases
Orientation:
Minus strand

Genomic View for LINC02233 Gene

Genes around LINC02233 on UCSC Golden Path with GeneCards custom track
LINC02233 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC02233 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02233 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02233 Gene

Proteins for LINC02233 Gene

Post-translational modifications for LINC02233 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02233 Gene

Domains & Families for LINC02233 Gene

Gene Families for LINC02233 Gene

genes like me logo Genes that share domains with LINC02233: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02233 Gene

Function for LINC02233 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02233 Gene

Localization for LINC02233 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02233 Gene

Pathways & Interactions for LINC02233 Gene

PathCards logo

SuperPathways for LINC02233 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02233 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02233 Gene

Drugs & Compounds for LINC02233 Gene

No Compound Related Data Available

Transcripts for LINC02233 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02233 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00000ED543_9606 lncRNA 358 4

RefSeq: NR_146278,

LncBook: HSALNT0080161,

LNCipedia: LINC02233:3,

NONCODE: NONHSAT099029.2,

URS0000EF3B52_9606 lncRNA 1072 1

Ensembl: ENST00000513718 (view in UCSC) ,

URS0001BD0CD7_9606 lncRNA 4301 1

LncBook: HSALNT0080160,

URS0001BEE322_9606 lncRNA 2512 1

LncBook: HSALNT0080166,

URS0001BEF38B_9606 lncRNA 2382 1

LncBook: HSALNT0080167,

LINC02233 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02233 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02233 Gene

No ASD Table

Relevant External Links for LINC02233 Gene

GeneLoc Exon Structure for
LINC02233

Expression for LINC02233 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02233 Gene

Orthologs for LINC02233 Gene

Evolution for LINC02233 Gene

ENSEMBL:
Gene Tree for LINC02233 (if available)
TreeFam:
Gene Tree for LINC02233 (if available)

No data available for Orthologs for LINC02233 Gene

Paralogs for LINC02233 Gene

No data available for Paralogs for LINC02233 Gene

Variants for LINC02233 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC02233 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for LINC02233 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02233

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02233 Gene

Disorders for LINC02233 Gene

Additional Disease Information for LINC02233

No disorders were found for LINC02233 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02233 Gene

Publications for LINC02233 Gene

  1. Discovery of Cancer Driver Long Noncoding RNAs across 1112 Tumour Genomes: New Candidates and Distinguishing Features. (PMID: 28128360) Lanzós A … Johnson R (Scientific reports 2017) 2 3

Products for LINC02233 Gene

Sources for LINC02233 Gene