Aliases for LINC02231 Gene

Subcategory (RNA class) for LINC02231 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC02231 Gene

  • Long Intergenic Non-Protein Coding RNA 2231 2 3 5
  • LINC02231 2 168
  • HSALNG0091963 167
  • NONHSAG011547 92
  • RP11-766N7.4 3

External Ids for LINC02231 Gene

Summaries for LINC02231 Gene

GeneCards Summary for LINC02231 Gene

LINC02231 (Long Intergenic Non-Protein Coding RNA 2231) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC02231 include Esophageal Cancer.

Additional gene information for LINC02231 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02231 Gene

Genomics for LINC02231 Gene

GeneHancer (GH) Regulatory Elements for LINC02231 Gene

Promoters and enhancers for LINC02231 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J064969 Enhancer 0.7 Ensembl ENCODE 0.4 +13.0 12992 1.3 POLR2A ZNF316 MAFF MAFK NFE2 DPF2 STAT3 NFE2L2 FOS MTA2 RNU6-166P LINC02389 LINC02231 RF00619-007 RNU6ATAC42P
GH12J064976 Enhancer 0.6 Ensembl 0.4 +6.1 6124 0.4 BCL11A SRF MEF2B IKZF1 TBX21 NFIC BHLHE40 MTA2 IKZF2 EBF1 LINC02231 RF00619-007 RNU6ATAC42P LINC02389
GH12J064943 Enhancer 0.7 Ensembl ENCODE 0.3 +38.5 38541 1.6 TCF12 CBFB ATF2 POLR2A EZH2 NFIC CREB1 RUNX3 SCRT2 WIF1 LINC02389 RNU6ATAC42P RF00619-007 LINC02231
GH12J064944 Enhancer 0.7 Ensembl ENCODE 0.3 +36.2 36152 2.9 NR2F2 POLR2A RCOR1 SMARCA4 TCF7L2 GATA2 SP1 RNU6-166P LINC02389 RF00619-007 RNU6ATAC42P LINC02231
GH12J064955 Enhancer 0.3 Ensembl 0.3 +26.2 26223 1 YY1 RNU6-166P RF00619-007 RNU6ATAC42P LINC02231 LINC02389
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02231 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02231 Gene

Genomic Locations for LINC02231 Gene
chr12:64,920,844-64,982,524
(GRCh38/hg38)
Size:
61,681 bases
Orientation:
Minus strand
chr12:65,314,625-65,376,304
(GRCh37/hg19)
Size:
61,680 bases
Orientation:
Minus strand

Genomic View for LINC02231 Gene

Genes around LINC02231 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02231 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02231 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02231 Gene

Proteins for LINC02231 Gene

Post-translational modifications for LINC02231 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02231 Gene

Domains & Families for LINC02231 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02231 Gene

Function for LINC02231 Gene

Phenotypes From GWAS Catalog for LINC02231 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02231 Gene

Localization for LINC02231 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02231 Gene

Pathways & Interactions for LINC02231 Gene

PathCards logo

SuperPathways for LINC02231 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC02231 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02231 Gene

Drugs & Compounds for LINC02231 Gene

No Compound Related Data Available

Transcripts for LINC02231 Gene

mRNA/cDNA for LINC02231 Gene

3 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
1 NONCODE transcripts :
1 LncBook transcripts :
1 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02231 Gene

No ASD Table

Relevant External Links for LINC02231 Gene

GeneLoc Exon Structure for
LINC02231

Expression for LINC02231 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02231 Gene

Orthologs for LINC02231 Gene

Evolution for LINC02231 Gene

ENSEMBL:
Gene Tree for LINC02231 (if available)
TreeFam:
Gene Tree for LINC02231 (if available)

No data available for Orthologs for LINC02231 Gene

Paralogs for LINC02231 Gene

No data available for Paralogs for LINC02231 Gene

Variants for LINC02231 Gene

Additional dbSNP identifiers (rs#s) for LINC02231 Gene

Additional Variant Information for LINC02231 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02231

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02231 Gene

Disorders for LINC02231 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LINC02231 Gene - From: LncRNADisease

Disorder Aliases PubMed IDs
esophageal cancer
  • esophageal cancer, somatic
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC02231

genes like me logo Genes that share disorders with LINC02231: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC02231 Gene

Publications for LINC02231 Gene

  1. Long noncoding RNA RP11-766N7.4 functions as a tumor suppressor by regulating epithelial-mesenchymal transition in esophageal squamous cell carcinoma. (PMID: 28157654) Yao GL … Chen YJ (Biomedicine & pharmacotherapy = Biomedecine & pharmacotherapie 2017) 2 3 54

Products for LINC02231 Gene

Sources for LINC02231 Gene