Aliases for LINC02224 Gene

Data sources for LINC02224 Gene:

RNA type for LINC02224 Gene

lncRNA

Aliases for LINC02224 Gene

External Ids for LINC02224 Gene

Summaries for LINC02224 Gene

GeneCards Summary for LINC02224 Gene

LINC02224 (Long Intergenic Non-Protein Coding RNA 2224) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02224 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02224 Gene

Genomics for LINC02224 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02224 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J044690 Enhancer 0.6 ENCODE 0.4 +16.4 16421 2.2 CEBPB ZNF217 EP300 CTBP1 JUND TCF7L2 SMARCE1 ATF4 DPF2 FOS MRPS30-DT HSALNG0041556 ENSG00000250418 LINC02224 MRPS30 FGF10
GH05J044665 Enhancer 0.6 ENCODE 0.3 +42.4 42442 0.2 EBF1 BHLHE40 IKZF1 BMI1 NR2F1 TCF12 EGR2 RAD51 DPF2 ZFHX2 piR-33432-403 LINC02224 HSALNG0041554 MRPS30 FGF10
GH05J044666 Enhancer 0.5 ENCODE 0.3 +42.7 42742 0.2 JUND IKZF1 BMI1 ZFHX2 GATAD2B piR-33432-403 LINC02224 HSALNG0041554 MRPS30 FGF10
GH05J044638 Enhancer 0.5 Ensembl 0.2 +69.4 69415 0.4 SIX4 CTBP1 PKNOX1 CTCF CREB1 RAD21 GATAD2B HSALNG0041554 piR-33432-403 LINC02224 MRPS30 FGF10
GH05J044538 Enhancer 0.8 Ensembl ENCODE 0.1 +168.9 168888 1.6 BRCA1 CEBPB DEK MAX EP300 RFX5 SMC3 STAT3 TBP TCF7L2 lnc-MRPS30-2 HSALNG0041551 FGF10 FGF10-AS1 LINC02224 MRPS30
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02224 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02224 Gene

Latest Assembly
chr5:44,494,577-44,708,016
(GRCh38/hg38)
Size:
213,440 bases
Orientation:
Minus strand

Previous Assembly
chr5:44,495,246-44,510,384
(GRCh37/hg19 by Entrez Gene)
Size:
15,139 bases
Orientation:
Minus strand

chr5:44,495,720-44,510,384
(GRCh37/hg19 by Ensembl)
Size:
14,665 bases
Orientation:
Minus strand

Genomic View for LINC02224 Gene

Genes around LINC02224 on UCSC Golden Path with GeneCards custom track
LINC02224 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC02224 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02224 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02224 Gene

Proteins for LINC02224 Gene

Post-translational modifications for LINC02224 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02224 Gene

Domains & Families for LINC02224 Gene

Gene Families for LINC02224 Gene

genes like me logo Genes that share domains with LINC02224: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02224 Gene

Function for LINC02224 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02224 Gene

Localization for LINC02224 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02224 Gene

Pathways & Interactions for LINC02224 Gene

PathCards logo

SuperPathways for LINC02224 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02224 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02224 Gene

Drugs & Compounds for LINC02224 Gene

No Compound Related Data Available

Transcripts for LINC02224 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02224 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00004B70E6_9606 lncRNA 587 4

Ensembl: ENST00000505706 (view in UCSC) ,

LncBook: HSALNT0087342,

LNCipedia: LINC02224:6,

NONCODE: NONHSAT101332.2,

URS0000187D31_9606 lncRNA 542 4

Ensembl: ENST00000510758 (view in UCSC) ,

LncBook: HSALNT0087343,

LNCipedia: LINC02224:5,

NONCODE: NONHSAT101333.2,

URS00008E3979_9606 lncRNA 1099 1

RefSeq: NR_131946,

URS0000EEDD35_9606 lncRNA 1094 1

Ensembl: ENST00000671607 (view in UCSC) ,

URS0001BCC7D8_9606 lncRNA 2442 1

LncBook: HSALNT0087340,

LINC02224 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02224 Gene

4 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02224 Gene

No ASD Table

Relevant External Links for LINC02224 Gene

GeneLoc Exon Structure for
LINC02224

Expression for LINC02224 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02224 Gene

Orthologs for LINC02224 Gene

Evolution for LINC02224 Gene

ENSEMBL:
Gene Tree for LINC02224 (if available)
TreeFam:
Gene Tree for LINC02224 (if available)
Alliance of Genome Resources:
Additional Orthologs for LINC02224

No data available for Orthologs for LINC02224 Gene

Paralogs for LINC02224 Gene

No data available for Paralogs for LINC02224 Gene

Variants for LINC02224 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC02224 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for LINC02224 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02224
Leiden Open Variation Database (LOVD)
LINC02224

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02224 Gene

Disorders for LINC02224 Gene

Additional Disease Information for LINC02224

No disorders were found for LINC02224 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02224 Gene

Publications for LINC02224 Gene

  1. Deregulated lncRNAs in B Cells from Patients with Active Tuberculosis. (PMID: 28125665) Fu Y … Yi Z (PloS one 2017) 2 3
  2. The landscape of long noncoding RNAs in the human transcriptome. (PMID: 25599403) Iyer MK … Chinnaiyan AM (Nature genetics 2015) 2 3
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  4. Creation of genome-wide protein expression libraries using random activation of gene expression. (PMID: 11329013) Harrington JJ … Ducar M (Nature biotechnology 2001) 3

Products for LINC02224 Gene

Sources for LINC02224 Gene