Aliases for LINC02224 Gene

Subcategory (RNA class) for LINC02224 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC02224 Gene

  • Long Intergenic Non-Protein Coding RNA 2224 2 3 5
  • Breast Cancer-Associated Transcript 107 2 3
  • LINC02224 2 168
  • HSALNG0041549 167
  • NONHSAG040325 92
  • BRCAT107 3

External Ids for LINC02224 Gene

Summaries for LINC02224 Gene

GeneCards Summary for LINC02224 Gene

LINC02224 (Long Intergenic Non-Protein Coding RNA 2224) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02224 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02224 Gene

Genomics for LINC02224 Gene

GeneHancer (GH) Regulatory Elements for LINC02224 Gene

Promoters and enhancers for LINC02224 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J044690 Enhancer 0.8 Ensembl ENCODE 0.7 -4.4 -4413 2.2 ZNF217 EP300 CTBP1 CEBPG CEBPB JUN JUND DPF2 ATF4 TCF7L2 MRPS30-DT LINC02224 ENSG00000250418
GH05J044666 Enhancer 0.8 Ensembl ENCODE 0.4 +21.8 21791 1 POLR2A FOS ZFHX2 SMARCB1 EBF1 IKZF1 BMI1 NR2F1 JUND BHLHE40 piR-33432-403 LINC02224 piR-61580-517
GH05J044638 Enhancer 0.5 Ensembl 0.3 +48.6 48581 0.4 EP300 GATAD2B CTBP1 SIX4 PKNOX1 CTCF RAD21 CREB1 piR-61580-517 piR-33432-403 LINC02224
GH05J044538 Enhancer 0.9 Ensembl ENCODE 0.1 +148.1 148054 1.6 RFX1 EP300 DEK SMARCC1 SMARCC2 BRCA1 CEBPB FOS CHD2 RCOR1 piR-45012-404 piR-56186-058 LINC02224
GH05J044696 Enhancer 0.2 Ensembl 0.4 -10.0 -10019 0.8 ENSG00000250418 LINC02224
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02224 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02224 Gene

Genomic Locations for LINC02224 Gene
chr5:44,495,099-44,687,182
(GRCh38/hg38)
Size:
192,084 bases
Orientation:
Minus strand

Genomic View for LINC02224 Gene

Genes around LINC02224 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02224 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02224 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02224 Gene

Proteins for LINC02224 Gene

Post-translational modifications for LINC02224 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02224 Gene

Domains & Families for LINC02224 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02224 Gene

Function for LINC02224 Gene

Phenotypes From GWAS Catalog for LINC02224 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02224 Gene

Localization for LINC02224 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02224 Gene

Pathways & Interactions for LINC02224 Gene

PathCards logo

SuperPathways for LINC02224 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC02224 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02224 Gene

Drugs & Compounds for LINC02224 Gene

No Compound Related Data Available

Transcripts for LINC02224 Gene

mRNA/cDNA for LINC02224 Gene

7 RNACentral transcripts :
1 REFSEQ mRNAs :
4 NCBI additional mRNA sequence :
3 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
3 NONCODE transcripts :
3 LncBook transcripts :
3 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02224 Gene

No ASD Table

Relevant External Links for LINC02224 Gene

GeneLoc Exon Structure for
LINC02224

Expression for LINC02224 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02224 Gene

Orthologs for LINC02224 Gene

Evolution for LINC02224 Gene

ENSEMBL:
Gene Tree for LINC02224 (if available)
TreeFam:
Gene Tree for LINC02224 (if available)

No data available for Orthologs for LINC02224 Gene

Paralogs for LINC02224 Gene

No data available for Paralogs for LINC02224 Gene

Variants for LINC02224 Gene

Additional dbSNP identifiers (rs#s) for LINC02224 Gene

Additional Variant Information for LINC02224 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02224

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02224 Gene

Disorders for LINC02224 Gene

Additional Disease Information for LINC02224

No disorders were found for LINC02224 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02224 Gene

Publications for LINC02224 Gene

  1. Deregulated lncRNAs in B Cells from Patients with Active Tuberculosis. (PMID: 28125665) Fu Y … Yi Z (PloS one 2017) 2 3 54
  2. The landscape of long noncoding RNAs in the human transcriptome. (PMID: 25599403) Iyer MK … Chinnaiyan AM (Nature genetics 2015) 2 3 54
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 54
  4. Creation of genome-wide protein expression libraries using random activation of gene expression. (PMID: 11329013) Harrington JJ … Ducar M (Nature biotechnology 2001) 3 54

Products for LINC02224 Gene

Sources for LINC02224 Gene