Aliases for LINC02210 Gene

Subcategory (RNA class) for LINC02210 Gene

ncRNA

Quality Score for this RNA gene is

14

Aliases for LINC02210 Gene

  • Long Intergenic Non-Protein Coding RNA 2210 2 3 5
  • CRHR1 Intronic Transcript 1 (Non-Protein Coding) 2 3
  • LINC.Tmp695175 2 3
  • Chromosome 17 Open Reading Frame 69 2
  • CRHR1 Intronic Transcript 1 2
  • Lnc-LINC02210-CRHR1-52 170
  • HSALNG0116892 169
  • NONHSAG022004 94
  • NONHSAG023141 94
  • NONHSAG023140 94
  • CRHR1-IT1 3
  • LINC02210 2
  • C17orf69 3

External Ids for LINC02210 Gene

Previous HGNC Symbols for LINC02210 Gene

  • C17orf69
  • CRHR1-IT1

Previous GeneCards Identifiers for LINC02210 Gene

  • GC17P045662
  • GC17P045674
  • GC17P045628
  • GC17P045629
  • GC17P045647
  • GC17P045649

Summaries for LINC02210 Gene

GeneCards Summary for LINC02210 Gene

LINC02210 (Long Intergenic Non-Protein Coding RNA 2210) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LINC02210 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02210 Gene

Genomics for LINC02210 Gene

GeneHancer (GH) Regulatory Elements for LINC02210 Gene

Promoters and enhancers for LINC02210 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02210 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02210 Gene

Genomic Locations for LINC02210 Gene
chr17:45,620,328-45,816,543
(GRCh38/hg38)
Size:
196,216 bases
Orientation:
Plus strand
chr17:43,697,694-43,725,582
(GRCh37/hg19)
Size:
27,889 bases
Orientation:
Plus strand

Genomic View for LINC02210 Gene

Genes around LINC02210 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02210 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02210 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02210 Gene

Proteins for LINC02210 Gene

Post-translational modifications for LINC02210 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02210 Gene

Domains & Families for LINC02210 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02210 Gene

Function for LINC02210 Gene

Phenotypes From GWAS Catalog for LINC02210 Gene

Phenotypes for LINC02210 Gene

genes like me logo Genes that share phenotypes with LINC02210: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02210 Gene

Localization for LINC02210 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02210 Gene

Pathways & Interactions for LINC02210 Gene

PathCards logo

SuperPathways for LINC02210 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02210 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02210 Gene

Drugs & Compounds for LINC02210 Gene

No Compound Related Data Available

Transcripts for LINC02210 Gene

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02210 Gene

No ASD Table

Relevant External Links for LINC02210 Gene

GeneLoc Exon Structure for
LINC02210
ECgene alternative splicing isoforms for
LINC02210

Expression for LINC02210 Gene

No Expression Related Data Available

Primer Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02210 Gene

Orthologs for LINC02210 Gene

Evolution for LINC02210 Gene

ENSEMBL:
Gene Tree for LINC02210 (if available)
TreeFam:
Gene Tree for LINC02210 (if available)

No data available for Orthologs for LINC02210 Gene

Paralogs for LINC02210 Gene

No data available for Paralogs for LINC02210 Gene

Variants for LINC02210 Gene

Sequence variations from dbSNP and Humsavar for LINC02210 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1000150216 -- 45,636,397(+) T/C intron_variant, non_coding_transcript_variant
rs1000195665 -- 45,633,188(+) G/A intron_variant
rs1000238618 -- 45,619,905(+) A/T upstream_transcript_variant
rs1000309110 -- 45,637,623(+) A/G intron_variant, non_coding_transcript_variant
rs1000345667 -- 45,627,711(+) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC02210 Gene

Variant ID Type Subtype PubMed ID
esv2758691 CNV gain+loss 17122850
esv2762433 CNV gain+loss 21179565
esv3640670 CNV loss 21293372
nsv1060303 CNV gain 25217958
nsv1133406 CNV deletion 24896259
nsv1146669 OTHER inversion 26484159
nsv457744 CNV gain 19166990
nsv575138 CNV gain 21841781
nsv833458 CNV gain 17160897

Additional Variant Information for LINC02210 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02210

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC02210 Gene

Disorders for LINC02210 Gene

Additional Disease Information for LINC02210

No disorders were found for LINC02210 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02210 Gene

Publications for LINC02210 Gene

  1. Imputation of sequence variants for identification of genetic risks for Parkinson's disease: a meta-analysis of genome-wide association studies. (PMID: 21292315) International Parkinson Disease Genomics Consortium … Wood NW (Lancet (London, England) 2011) 3 56
  2. The transcriptome of human CD34+ hematopoietic stem-progenitor cells. (PMID: 19416867) Kim YC … Wang SM (Proceedings of the National Academy of Sciences of the United States of America 2009) 3 56
  3. Genome-wide association study reveals genetic risk underlying Parkinson's disease. (PMID: 19915575) Simón-Sánchez J … Gasser T (Nature genetics 2009) 3 56
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 56
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 56

Products for LINC02210 Gene

Sources for LINC02210 Gene