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Aliases for LINC02208 Gene

Subcategory (RNA class) for LINC02208 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC02208 Gene

  • Long Intergenic Non-Protein Coding RNA 2208 2 3 5
  • Heart Tissue-Associated Transcript 56 2 3
  • CTD-2281M20.1 3
  • HRAT56 3

External Ids for LINC02208 Gene

Summaries for LINC02208 Gene

GeneCards Summary for LINC02208 Gene

LINC02208 (Long Intergenic Non-Protein Coding RNA 2208) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC02208 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC02208 Gene

Genomics for LINC02208 Gene

GeneHancer (GH) Regulatory Elements for LINC02208 Gene

Promoters and enhancers for LINC02208 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J118553 Enhancer 0.4 ENCODE 10.4 +8.2 8177 0.8 JUNB ATF7 MEF2B LINC02208 GC05M117604
GH05J118569 Enhancer 0.4 ENCODE 6 -7.6 -7644 0.2 GATA3 FOXA1 LINC02208 LINC02216
GH05J118692 Enhancer 0.4 ENCODE 4.5 -130.8 -130778 0.8 CTCF POLR2A DTWD2 LINC02208 RNU7-34P LINC02215
GH05J118451 Enhancer 0.4 ENCODE 0.1 +110.9 110946 0.1 POU5F1 EZH2 GC05M117604 LINC02208
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC02208 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02208 Gene

Genomic Locations for LINC02208 Gene
chr5:118,350,966-118,562,117
(GRCh38/hg38)
Size:
211,152 bases
Orientation:
Minus strand
chr5:117,803,851-117,897,812
(GRCh37/hg19)
Size:
93,962 bases
Orientation:
Minus strand

Genomic View for LINC02208 Gene

Genes around LINC02208 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02208 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02208 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02208 Gene

Proteins for LINC02208 Gene

Post-translational modifications for LINC02208 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02208 Gene

Domains & Families for LINC02208 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC02208 Gene

Function for LINC02208 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02208 Gene

Localization for LINC02208 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02208 Gene

Pathways & Interactions for LINC02208 Gene

SuperPathways for LINC02208 Gene

No Data Available

Interacting Proteins for LINC02208 Gene

Gene Ontology (GO) - Biological Process for LINC02208 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02208 Gene

Drugs & Compounds for LINC02208 Gene

No Compound Related Data Available

Transcripts for LINC02208 Gene

mRNA/cDNA for LINC02208 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(3) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02208 Gene

No ASD Table

Relevant External Links for LINC02208 Gene

GeneLoc Exon Structure for
LINC02208
ECgene alternative splicing isoforms for
LINC02208

Expression for LINC02208 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02208 Gene

Orthologs for LINC02208 Gene

Evolution for LINC02208 Gene

ENSEMBL:
Gene Tree for LINC02208 (if available)
TreeFam:
Gene Tree for LINC02208 (if available)

No data available for Orthologs for LINC02208 Gene

Paralogs for LINC02208 Gene

No data available for Paralogs for LINC02208 Gene

Variants for LINC02208 Gene

Sequence variations from dbSNP and Humsavar for LINC02208 Gene

SNP ID Clin Chr 05 pos Variation AA Info Type
rs1000006600 -- 118,400,889(-) T/C intron_variant
rs1000007561 -- 118,375,765(-) T/C intron_variant
rs1000049660 -- 118,395,858(-) T/C intron_variant
rs1000052698 -- 118,521,183(-) C/T non_coding_transcript_variant
rs1000059691 -- 118,375,612(-) C/T intron_variant

Additional Variant Information for LINC02208 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02208

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02208 Gene

Disorders for LINC02208 Gene

No disorders were found for LINC02208 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02208 Gene

Publications for LINC02208 Gene

No publications were found for LINC02208 Gene.

Products for LINC02208 Gene

Sources for LINC02208 Gene

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