LINC02193 Gene (RNA Gene)

Long Intergenic Non-Protein Coding RNA 2193

GC16P090184
GIFtS:
6

Aliases for LINC02193 Gene

Subcategory (RNA class) for LINC02193 Gene

lncRNA

Quality Score for this RNA gene is

14

Aliases for LINC02193 Gene

  • Long Intergenic Non-Protein Coding RNA 2193 2 3 5
  • NONHSAG020393 94
  • HSALNG0113694 169
  • Lnc-GAS8-1 170
  • LINC02193 2

External Ids for LINC02193 Gene

Previous GeneCards Identifiers for LINC02193 Gene

  • GC16P090181
  • GC16P090182
  • GC16P090176
  • GC16P090177
  • GC16P090178
  • GC16P090179
  • GC16P090180

Summaries for LINC02193 Gene

GeneCards Summary for LINC02193 Gene

LINC02193 (Long Intergenic Non-Protein Coding RNA 2193) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02193 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02193 Gene

Genomics for LINC02193 Gene

GeneHancer (GH) Regulatory Elements for LINC02193 Gene

Promoters and enhancers for LINC02193 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH16J090174 Enhancer 0.4 Ensembl 750.6 +1.3 1283 0.6 ATF7 ZFHX2 ATF2 CICP25 ENSG00000277349 LINC02193 piR-36559-008 piR-32609-010 piR-59058 piR-52012-010 FAM157C
GH16J089593 Enhancer 0.5 Ensembl ENCODE 4.4 -579.4 -579416 1.6 ZNF10 ZBTB33 hsa-miR-5095-201 CDK10 DBNDD1 TUBB3 LINC02193 lnc-CHMP1A-3 CPNE7
GH16J090215 Enhancer 0.5 Ensembl 0.3 +42.6 42584 1.6 CTCF NFIB ARID2 REST NFIC HSALNG0010917-007 piR-57308-003 DBNDD1 HSALNG0023753-005 LINC02193
GH16J090221 Enhancer 0.2 Ensembl 0.2 +48.5 48483 1 HSALNG0113698 piR-32350-002 LINC02193
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02193 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02193 Gene

Genomic Locations for LINC02193 Gene
chr16:90,173,217-90,222,851
(GRCh38/hg38)
Size:
49,635 bases
Orientation:
Plus strand
chr16:90,252,405-90,289,086
(GRCh37/hg19)
Size:
36,682 bases
Orientation:
Plus strand

Genomic View for LINC02193 Gene

Genes around LINC02193 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02193 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02193 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LINC02193 Gene

Proteins for LINC02193 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LINC02193 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02193 Gene

Domains & Families for LINC02193 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02193 Gene

Function for LINC02193 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02193 Gene

Localization for LINC02193 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02193 Gene

Pathways & Interactions for LINC02193 Gene

PathCards logo

SuperPathways for LINC02193 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02193 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02193 Gene

Drugs & Compounds for LINC02193 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LINC02193 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for LINC02193 Gene

(15) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(9) RNACentral transcripts :
(6) LncBook transcripts :
(6) NONCODE transcripts :
(7) LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02193 Gene

No ASD Table

Relevant External Links for LINC02193 Gene

GeneLoc Exon Structure for
LINC02193
ECgene alternative splicing isoforms for
LINC02193

Expression for LINC02193 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02193 Gene

Orthologs for LINC02193 Gene

Evolution for LINC02193 Gene

ENSEMBL:
Gene Tree for LINC02193 (if available)
TreeFam:
Gene Tree for LINC02193 (if available)

No data available for Orthologs for LINC02193 Gene

Paralogs for LINC02193 Gene

No data available for Paralogs for LINC02193 Gene

Variants for LINC02193 Gene

Sequence variations from dbSNP and Humsavar for LINC02193 Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs1000345465 -- 90,224,041(+) T/G non_coding_transcript_variant
rs1000509704 -- 90,184,463(+) T/C upstream_transcript_variant
rs1000575697 -- 90,190,909(+) A/G intron_variant
rs1000910735 -- 90,213,106(+) G/C intron_variant
rs1001626442 -- 90,193,914(+) A/G intron_variant

Additional Variant Information for LINC02193 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02193

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02193 Gene

Disorders for LINC02193 Gene

No disorders were found for LINC02193 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02193 Gene

Publications for LINC02193 Gene

No publications were found for LINC02193 Gene.

No data available for External Links for LINC02193 Gene

Products for LINC02193 Gene

Sources for LINC02193 Gene