Aliases for LINC02189 Gene

Subcategory (RNA class) for LINC02189 Gene

lncRNA

Quality Score for this RNA gene is

14

Aliases for LINC02189 Gene

  • Long Intergenic Non-Protein Coding RNA 2189 2 3 5
  • HSALNG0113331 169
  • NONHSAG020230 94
  • LINC02189 170

External Ids for LINC02189 Gene

Summaries for LINC02189 Gene

GeneCards Summary for LINC02189 Gene

LINC02189 (Long Intergenic Non-Protein Coding RNA 2189) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02189 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02189 Gene

Genomics for LINC02189 Gene

GeneHancer (GH) Regulatory Elements for LINC02189 Gene

Promoters and enhancers for LINC02189 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J086736 Enhancer 0.7 Ensembl ENCODE CraniofacialAtlas 11.2 -12.1 -12055 3 POLR2A EZH2 LINC02188 LINC02189 piR-41245-100
GH16J086718 Enhancer 0.3 Ensembl 16.3 +3.5 3542 0.6 CEBPB IKZF1 LINC02189 LINC02188
GH16J086729 Enhancer 0.3 CraniofacialAtlas 15.4 -8.3 -8253 1 NRF1 LINC02188 LINC02189 piR-41245-100
GH16J086740 Enhancer 0.9 ENCODE CraniofacialAtlas 0.4 -19.2 -19202 2.1 POLR2A ZNF362 ZNF384 SP7 GLIS2 PKNOX1 PRDM10 ZEB2 ZNF629 PATZ1 piR-37567-072 piR-41245-100 piR-30444-127 LINC02188 lnc-MTHFSD-7 LINC02189
GH16J086710 Enhancer 0.3 CraniofacialAtlas 0.4 +10.9 10947 0.2 EZH2 LINC02188 LINC02189
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02189 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02189 Gene

Genomic Locations for LINC02189 Gene
chr16:86,720,564-86,722,042
(GRCh38/hg38)
Size:
1,479 bases
Orientation:
Minus strand
chr16:86,754,294-86,755,560
(GRCh37/hg19)
Size:
1,267 bases
Orientation:
Minus strand

Genomic View for LINC02189 Gene

Genes around LINC02189 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02189 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02189 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02189 Gene

Proteins for LINC02189 Gene

Post-translational modifications for LINC02189 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02189 Gene

Domains & Families for LINC02189 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02189 Gene

Function for LINC02189 Gene

Phenotypes From GWAS Catalog for LINC02189 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02189 Gene

Localization for LINC02189 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02189 Gene

Pathways & Interactions for LINC02189 Gene

PathCards logo

SuperPathways for LINC02189 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02189 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02189 Gene

Drugs & Compounds for LINC02189 Gene

No Compound Related Data Available

Transcripts for LINC02189 Gene

mRNA/cDNA for LINC02189 Gene

(3) Additional mRNA sequences :
(7) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(10) RNACentral transcripts :
(5) LncBook transcripts :
(8) LNCipedia transcripts :
(7) NONCODE transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02189 Gene

No ASD Table

Relevant External Links for LINC02189 Gene

GeneLoc Exon Structure for
LINC02189
ECgene alternative splicing isoforms for
LINC02189

Expression for LINC02189 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02189 Gene

Orthologs for LINC02189 Gene

Evolution for LINC02189 Gene

ENSEMBL:
Gene Tree for LINC02189 (if available)
TreeFam:
Gene Tree for LINC02189 (if available)

No data available for Orthologs for LINC02189 Gene

Paralogs for LINC02189 Gene

No data available for Paralogs for LINC02189 Gene

Variants for LINC02189 Gene

Sequence variations from dbSNP and Humsavar for LINC02189 Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs1000353099 -- 86,722,152(-) G/C upstream_transcript_variant
rs1001141897 -- 86,723,140(-) T/G upstream_transcript_variant
rs1001362349 -- 86,722,195(-) T/C upstream_transcript_variant
rs1001901926 -- 86,722,890(-) G/A/T upstream_transcript_variant
rs1002841515 -- 86,722,170(-) C/A/T upstream_transcript_variant

Additional Variant Information for LINC02189 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02189

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02189 Gene

Disorders for LINC02189 Gene

Additional Disease Information for LINC02189

No disorders were found for LINC02189 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02189 Gene

Publications for LINC02189 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 56

No data available for External Links for LINC02189 Gene

Products for LINC02189 Gene

Sources for LINC02189 Gene