Aliases for LINC02188 Gene

Subcategory (RNA class) for LINC02188 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for LINC02188 Gene

  • Long Intergenic Non-Protein Coding RNA 2188 2 3 5
  • LINC02188 2 170
  • HSALNG0113333 169
  • HSALNG0113330 169
  • NONHSAG020229 94

External Ids for LINC02188 Gene

Summaries for LINC02188 Gene

GeneCards Summary for LINC02188 Gene

LINC02188 (Long Intergenic Non-Protein Coding RNA 2188) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02188 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02188 Gene

Genomics for LINC02188 Gene

GeneHancer (GH) Regulatory Elements for LINC02188 Gene

Promoters and enhancers for LINC02188 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J086710 Enhancer 0.3 CraniofacialAtlas 750.6 +1.0 973 0.2 EZH2 LINC02188 LINC02189
GH16J086736 Enhancer 0.7 Ensembl ENCODE CraniofacialAtlas 26.8 +24.0 23975 3 POLR2A EZH2 LINC02188 LINC02189 piR-41245-100
GH16J086740 Enhancer 0.9 ENCODE CraniofacialAtlas 12 +31.1 31122 2.1 POLR2A ZNF362 ZNF384 SP7 GLIS2 PKNOX1 PRDM10 ZEB2 ZNF629 PATZ1 piR-37567-072 piR-41245-100 piR-30444-127 LINC02188 lnc-MTHFSD-7 LINC02189
GH16J086661 Enhancer 1.5 FANTOM5 ENCODE CraniofacialAtlas dbSUPER 6.6 -46.3 -46260 4.9 SIN3A SMARCE1 POLR2A NR2F6 CREB1 ETV6 ZNF652 ZBTB33 NKRF ELF3 HSALNG0113327 LOC101928659 FOXC2 MTHFSD FOXL1 LINC02188 ENSG00000261161 GINS2
GH16J086750 Enhancer 0.7 Ensembl ENCODE 10.2 +41.5 41539 1.9 L3MBTL2 SP7 EGR1 SMARCC1 JUN JUND MAX MGA USF1 GLIS1 piR-38351-210 LINC02188 piR-36770-041
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02188 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02188 Gene

Genomic Locations for LINC02188 Gene
chr16:86,710,122-86,742,083
(GRCh38/hg38)
Size:
31,962 bases
Orientation:
Plus strand

Genomic View for LINC02188 Gene

Genes around LINC02188 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02188 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02188 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02188 Gene

Proteins for LINC02188 Gene

Post-translational modifications for LINC02188 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02188 Gene

Domains & Families for LINC02188 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02188 Gene

Function for LINC02188 Gene

Phenotypes From GWAS Catalog for LINC02188 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02188 Gene

Localization for LINC02188 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02188 Gene

Pathways & Interactions for LINC02188 Gene

PathCards logo

SuperPathways for LINC02188 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02188 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02188 Gene

Drugs & Compounds for LINC02188 Gene

No Compound Related Data Available

Transcripts for LINC02188 Gene

mRNA/cDNA for LINC02188 Gene

(2) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(10) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(19) RNACentral transcripts :
(8) LNCipedia transcripts :
(7) NONCODE transcripts :
(5) LncBook transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02188 Gene

No ASD Table

Relevant External Links for LINC02188 Gene

GeneLoc Exon Structure for
LINC02188
ECgene alternative splicing isoforms for
LINC02188

Expression for LINC02188 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02188 Gene

Orthologs for LINC02188 Gene

Evolution for LINC02188 Gene

ENSEMBL:
Gene Tree for LINC02188 (if available)
TreeFam:
Gene Tree for LINC02188 (if available)

No data available for Orthologs for LINC02188 Gene

Paralogs for LINC02188 Gene

No data available for Paralogs for LINC02188 Gene

Variants for LINC02188 Gene

Sequence variations from dbSNP and Humsavar for LINC02188 Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs1000155487 -- 86,734,076(+) G/A intron_variant
rs1000193607 -- 86,727,437(+) C/G intron_variant
rs1000266004 -- 86,729,798(+) G/C intron_variant
rs1000353099 -- 86,722,152(+) G/C intron_variant
rs1000397736 -- 86,733,992(+) C/A/T intron_variant

Additional Variant Information for LINC02188 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02188

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02188 Gene

Disorders for LINC02188 Gene

Additional Disease Information for LINC02188

No disorders were found for LINC02188 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02188 Gene

Publications for LINC02188 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 56

No data available for External Links for LINC02188 Gene

Products for LINC02188 Gene

Sources for LINC02188 Gene