Aliases for LINC02185 Gene

Subcategory (RNA class) for LINC02185 Gene

lncRNA

Number of RNA Genes sources:

4 / 17

Aliases for LINC02185 Gene

  • Long Intergenic Non-Protein Coding RNA 2185 2 3 5
  • LINC02185 2 5 165
  • NONHSAG018661.2 91
  • HSALNG0109713 164

External Ids for LINC02185 Gene

Summaries for LINC02185 Gene

GeneCards Summary for LINC02185 Gene

LINC02185 (Long Intergenic Non-Protein Coding RNA 2185) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02185 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02185 Gene

Genomics for LINC02185 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02185 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J014012 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE CraniofacialAtlas 600.7 +1.3 1328 4 CEBPG GATAD2A PRDM10 ZNF629 ZNF692 TARDBP ZHX2 FOXA1 PRDM1 PATZ1 LINC02185 PKD1P3 NPIPA1 NPIPA3 NPIPA2 RF00017-1977 MRTFB ERCC4
GH16J014007 Enhancer 0.9 Ensembl ENCODE 0.4 +8.4 8355 1.4 BACH1 JUND IKZF2 TRIM22 DPF2 RELB ZXDB NFE2 ZNF316 OSR2 LINC02185 RF00017-1977 MRTFB ERCC4
GH16J014002 Enhancer 1 ENCODE CraniofacialAtlas 0.4 +12.2 12176 2.7 CREB1 PRDM10 RFX1 IKZF1 KDM1A TARDBP ZHX2 PRDM1 ZIC2 PATZ1 LINC02185 RF00017-1977 MRTFB ERCC4
GH16J013993 Enhancer 1.1 FANTOM5 Ensembl ENCODE 0.4 +21.0 21010 2.3 GATAD2A PRDM10 ZNF629 RXRB SP1 ZNF600 CEBPA SOX13 ZXDB FOXA2 ENSG00000261819 PLA2G10 RF00017-1977 LINC02185 ERCC4 MRTFB
GH16J014011 Enhancer 0.5 ENCODE 0.7 +4.0 3987 0.2 ATF7 PRDM1 FOXA2 ATF2 ZFHX2 EGR2 LINC02185 RF00017-1977 MRTFB ERCC4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02185 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02185 Gene

Genomic Locations for LINC02185 Gene
chr16:14,001,079-14,016,056
(GRCh38/hg38)
Size:
14,978 bases
Orientation:
Minus strand
chr16:14,103,137-14,109,873
(GRCh37/hg19)
Size:
6,737 bases
Orientation:
Minus strand

Genomic View for LINC02185 Gene

Genes around LINC02185 on UCSC Golden Path with GeneCards custom track
LINC02185 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC02185 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02185 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02185 Gene

Proteins for LINC02185 Gene

Post-translational modifications for LINC02185 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02185 Gene

Domains & Families for LINC02185 Gene

Gene Families for LINC02185 Gene

genes like me logo Genes that share domains with LINC02185: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02185 Gene

Function for LINC02185 Gene

Phenotypes From GWAS Catalog for LINC02185 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02185 Gene

Localization for LINC02185 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02185 Gene

Pathways & Interactions for LINC02185 Gene

PathCards logo

SuperPathways for LINC02185 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02185 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02185 Gene

Drugs & Compounds for LINC02185 Gene

No Compound Related Data Available

Transcripts for LINC02185 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02185 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075E017_9606 lncRNA 766 3

HGNC: 53047,

RefSeq: NR_110909,

LNCipedia: LINC02185:17,

URS000004F553_9606 lncRNA 568 3

Ensembl: ENST00000576797 (view in UCSC) ,

LNCipedia: LINC02185:27,

NONCODE: NONHSAT140664.2,

URS0000EF1627_9606 lncRNA 3037 1

Ensembl: ENST00000654412 (view in UCSC) ,

URS0000EEE26D_9606 lncRNA 1961 1

Ensembl: ENST00000575424 (view in UCSC) ,

URS0000EF0468_9606 lncRNA 1610 1

Ensembl: ENST00000668908 (view in UCSC) ,

LINC02185 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02185 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02185 Gene

No ASD Table

Relevant External Links for LINC02185 Gene

GeneLoc Exon Structure for
LINC02185

Expression for LINC02185 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02185 Gene

Orthologs for LINC02185 Gene

Evolution for LINC02185 Gene

ENSEMBL:
Gene Tree for LINC02185 (if available)
TreeFam:
Gene Tree for LINC02185 (if available)

No data available for Orthologs for LINC02185 Gene

Paralogs for LINC02185 Gene

No data available for Paralogs for LINC02185 Gene

Variants for LINC02185 Gene

Additional dbSNP identifiers (rs#s) for LINC02185 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC02185 Gene

Variant ID Type Subtype PubMed ID
nsv457423 CNV gain 19166990
nsv571507 CNV gain 21841781

Additional Variant Information for LINC02185 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02185

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC02185 Gene

Disorders for LINC02185 Gene

No disorders were found for LINC02185 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02185 Gene

Publications for LINC02185 Gene

No publications were found for LINC02185 Gene.

No data available for Mastermind for LINC02185 Gene

Products for LINC02185 Gene

Sources for LINC02185 Gene