Aliases for LINC02182 Gene

Subcategory (RNA class) for LINC02182 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC02182 Gene

  • Long Intergenic Non-Protein Coding RNA 2182 2 3 5
  • LINC02182 2 5 165
  • NONHSAG020280.2 91
  • NONHSAG020277.2 91
  • LA16c-444G7.2 3
  • HSALNG0113481 164
  • Lnc-BANP-14 165

External Ids for LINC02182 Gene

Previous GeneCards Identifiers for LINC02182 Gene

  • GC16P088194

Summaries for LINC02182 Gene

GeneCards Summary for LINC02182 Gene

LINC02182 (Long Intergenic Non-Protein Coding RNA 2182) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02182 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02182 Gene

Genomics for LINC02182 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02182 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J088185 Enhancer 0.7 ENCODE CraniofacialAtlas dbSUPER 600.7 +0.3 264 2.2 MNT BHLHE40 ENSG00000261327 LINC02182 ENSG00000260162 LOC107984862 LOC105369246
GH16J088193 Enhancer 1.2 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 +8.2 8237 1.8 CREB1 CTCF ZNF629 REST CEBPA RAD21 CTBP1 ZNF444 SMC3 BHLHE40 ENSG00000261816 LINC02182 piR-53730 LOC107984862 LOC105369246
GH16J088189 Enhancer 0.3 Ensembl dbSUPER 0.7 +3.7 3696 1.8 ENSG00000261327 LINC02182 lnc-BANP-9 LOC107984862 LOC105369246
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02182 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02182 Gene

Genomic Locations for LINC02182 Gene
chr16:88,186,605-88,195,220
(GRCh38/hg38)
Size:
8,616 bases
Orientation:
Plus strand
chr16:88,227,920-88,228,823
(GRCh37/hg19)
Size:
904 bases
Orientation:
Plus strand

Genomic View for LINC02182 Gene

Genes around LINC02182 on UCSC Golden Path with GeneCards custom track
LINC02182 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC02182 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02182 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02182 Gene

Proteins for LINC02182 Gene

Post-translational modifications for LINC02182 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02182 Gene

Domains & Families for LINC02182 Gene

Gene Families for LINC02182 Gene

genes like me logo Genes that share domains with LINC02182: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02182 Gene

Function for LINC02182 Gene

Phenotypes From GWAS Catalog for LINC02182 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02182 Gene

Localization for LINC02182 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02182 Gene

Pathways & Interactions for LINC02182 Gene

PathCards logo

SuperPathways for LINC02182 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02182 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02182 Gene

Drugs & Compounds for LINC02182 Gene

No Compound Related Data Available

Transcripts for LINC02182 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02182 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075D300_9606 lncRNA 498 2

HGNC: 53044,

RefSeq: NR_110944,

URS00007676A1_9606 lncRNA 498 2

Ensembl: ENST00000569362 (view in UCSC) ,

LNCipedia: LINC02182:7,

URS0000EF2C6B_9606 lncRNA 401 1

Ensembl: ENST00000665557 (view in UCSC) ,

URS00008BA7A1_9606 lncRNA 512 3

LncBook: HSALNT0235245,

LNCipedia: LINC02182:6,

NONCODE: NONHSAT144376.2,

URS00008B5B25_9606 lncRNA 446 3

LncBook: HSALNT0235251,

LNCipedia: LINC02182:9,

NONCODE: NONHSAT144377.2,

LINC02182 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02182 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02182 Gene

No ASD Table

Relevant External Links for LINC02182 Gene

GeneLoc Exon Structure for
LINC02182

Expression for LINC02182 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC02182

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02182 Gene

Orthologs for LINC02182 Gene

Evolution for LINC02182 Gene

ENSEMBL:
Gene Tree for LINC02182 (if available)
TreeFam:
Gene Tree for LINC02182 (if available)

No data available for Orthologs for LINC02182 Gene

Paralogs for LINC02182 Gene

No data available for Paralogs for LINC02182 Gene

Variants for LINC02182 Gene

Additional dbSNP identifiers (rs#s) for LINC02182 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC02182 Gene

Variant ID Type Subtype PubMed ID
esv3582434 CNV loss 25503493
nsv1058465 CNV gain 25217958
nsv978177 CNV duplication 23825009

Additional Variant Information for LINC02182 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02182

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC02182 Gene

Disorders for LINC02182 Gene

No disorders were found for LINC02182 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02182 Gene

Publications for LINC02182 Gene

No publications were found for LINC02182 Gene.

No data available for Mastermind for LINC02182 Gene

Products for LINC02182 Gene

Sources for LINC02182 Gene