LINC02177 Gene (RNA Gene)

Long Intergenic Non-Protein Coding RNA 2177

GC16P009356
GIFtS:
8
See more...

Aliases for LINC02177 Gene

Subcategory (RNA class) for LINC02177 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC02177 Gene

  • Long Intergenic Non-Protein Coding RNA 2177 2 3 5
  • LINC02177 2 5 165
  • NONHSAG018541.2 91
  • HSALNG0109464 164
  • HSALNG0109475 164

External Ids for LINC02177 Gene

Summaries for LINC02177 Gene

GeneCards Summary for LINC02177 Gene

LINC02177 (Long Intergenic Non-Protein Coding RNA 2177) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02177 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02177 Gene

Genomics for LINC02177 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for LINC02177 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH16J009365 Enhancer 0.9 Ensembl ENCODE 0.4 +9.9 9913 0.2 REST TFE3 ZNF7 FOXA1 CEBPA FOXA2 ZBTB33 JUND NR2F2 RFX5 ENSG00000260071 LINC02177 LOC101927026 C16orf72 GRIN2A
GH16J009364 Enhancer 0.7 ENCODE 0.4 +9.3 9311 0.2 GATAD2A ATF7 REST TFE3 KDM1A RCOR2 IRF2 SP1 CEBPA SOX13 ENSG00000260071 LINC02177 LOC101927026 C16orf72 GRIN2A
GH16J009379 Enhancer 0.8 Ensembl ENCODE 0.4 +23.3 23313 1.4 ATF7 CEBPA SOX13 ATF3 CREB1 CEBPB CEBPG NFIL3 RXRA JUN ENSG00000260071 piR-31937-084 LINC02177 RF01045-046 LOC101927026 C16orf72 GRIN2A
GH16J009373 Enhancer 0.4 Ensembl 0.4 +18.1 18113 1.4 ATF2 RAD21 GATA2 CTCF piR-31937-084 ENSG00000260071 LINC02177 RF01045-046 LOC101927026 C16orf72 GRIN2A
GH16J009370 Enhancer 0.3 Ensembl 0.4 +14.7 14713 0.2 POLR2A SMARCA4 piR-31937-084 ENSG00000260071 LINC02177 RF01045-046 LOC101927026 C16orf72 GRIN2A
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02177 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02177 Gene

Genomic Locations for LINC02177 Gene
chr16:9,355,588-9,408,119
(GRCh38/hg38)
Size:
52,532 bases
Orientation:
Plus strand
chr16:9,449,445-9,501,950
(GRCh37/hg19)
Size:
52,506 bases
Orientation:
Plus strand

Genomic View for LINC02177 Gene

Genes around LINC02177 on UCSC Golden Path with GeneCards custom track
LINC02177 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC02177 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02177 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LINC02177 Gene

Proteins for LINC02177 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LINC02177 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02177 Gene

Domains & Families for LINC02177 Gene

Gene Families for LINC02177 Gene

HGNC:
genes like me logo Genes that share domains with LINC02177: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02177 Gene

Function for LINC02177 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LINC02177 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02177 Gene

Localization for LINC02177 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02177 Gene

Pathways & Interactions for LINC02177 Gene

PathCards logo

SuperPathways for LINC02177 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02177 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02177 Gene

Drugs & Compounds for LINC02177 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LINC02177 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02177 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00004A6B42_9606 lncRNA 5298 5

HGNC: 53039,

RefSeq: NR_135195,

Ensembl: ENST00000564305 (view in UCSC) ,

LNCipedia: LINC02177:18,

NONCODE: NONHSAT140461.2,

URS0000EEB516_9606 lncRNA 2576 1

Ensembl: ENST00000659361 (view in UCSC) ,

URS0000EEDAAC_9606 lncRNA 1570 1

Ensembl: ENST00000667976 (view in UCSC) ,

URS0000EF4A75_9606 lncRNA 1331 1

Ensembl: ENST00000664064 (view in UCSC) ,

URS0000EEEC91_9606 lncRNA 1224 1

Ensembl: ENST00000658945 (view in UCSC) ,

LINC02177 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02177 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02177 Gene

No ASD Table

Relevant External Links for LINC02177 Gene

GeneLoc Exon Structure for
LINC02177

Expression for LINC02177 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02177 Gene

Orthologs for LINC02177 Gene

Evolution for LINC02177 Gene

ENSEMBL:
Gene Tree for LINC02177 (if available)
TreeFam:
Gene Tree for LINC02177 (if available)

No data available for Orthologs for LINC02177 Gene

Paralogs for LINC02177 Gene

No data available for Paralogs for LINC02177 Gene

Variants for LINC02177 Gene

Additional dbSNP identifiers (rs#s) for LINC02177 Gene

Additional Variant Information for LINC02177 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02177

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02177 Gene

Disorders for LINC02177 Gene

Additional Disease Information for LINC02177

ATLAS of Genetics and Cytogenetics in Oncology and Haematology
Open Targets Platform

No disorders were found for LINC02177 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02177 Gene

Publications for LINC02177 Gene

No publications were found for LINC02177 Gene.

No data available for Mastermind for LINC02177 Gene

Products for LINC02177 Gene

Sources for LINC02177 Gene