Aliases for LINC02177 Gene

Data sources for LINC02177 Gene:

Subcategory (RNA class) for LINC02177 Gene

lncRNA

Aliases for LINC02177 Gene

External Ids for LINC02177 Gene

Summaries for LINC02177 Gene

GeneCards Summary for LINC02177 Gene

LINC02177 (Long Intergenic Non-Protein Coding RNA 2177) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02177 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02177 Gene

Genomics for LINC02177 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02177 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J009364 Enhancer 0.8 ENCODE 0.4 +9.3 9312 0.2 CEBPA FOXA2 RXRA ZSCAN9 ZBTB33 BCL6 JUND KDM1A SOX5 HMG20A piR-31937-084 LINC02177 LOC101927026 C16orf72 GRIN2A
GH16J009365 Enhancer 0.7 ENCODE 0.4 +9.9 9902 0.2 CEBPA FOXA2 SMAD4 RXRA RARA ZBTB33 JUND HNF4A FOXA1 RAD21 piR-31937-084 LINC02177 LOC101927026 C16orf72 GRIN2A
GH16J009379 Enhancer 0.8 Ensembl ENCODE 0.3 +23.2 23214 1.2 CEBPA RXRA RARA JUND SOX5 HNF4A CEBPG ATF2 ZBTB21 JUN piR-31937-084 HSALNG0109474 LINC02177 LOC101927026 C16orf72 GRIN2A
GH16J009396 Enhancer 0.5 Ensembl 0.3 +40.6 40614 0.4 FOXA2 RXRA TBX3 FOXA1 HHEX RAD21 HNF4A SP1 HSALNG0109474 RF01045-046 LINC02177 LOC101927026 C16orf72 GRIN2A
GH16J009373 Enhancer 0.3 Ensembl 0.4 +17.8 17814 0.8 ATF2 RAD21 piR-31937-084 LINC02177 HSALNG0109474 LOC101927026 C16orf72 GRIN2A
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02177 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02177 Gene

Latest Assembly
chr16:9,355,587-9,408,119
(GRCh38/hg38)
Size:
52,533 bases
Orientation:
Plus strand

Previous Assembly
chr16:9,449,445-9,501,950
(GRCh37/hg19 by Entrez Gene)
Size:
52,506 bases
Orientation:
Plus strand

chr16:9,449,445-9,501,950
(GRCh37/hg19 by Ensembl)
Size:
52,506 bases
Orientation:
Plus strand

Genomic View for LINC02177 Gene

Genes around LINC02177 on UCSC Golden Path with GeneCards custom track
LINC02177 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC02177 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02177 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02177 Gene

Proteins for LINC02177 Gene

Post-translational modifications for LINC02177 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02177 Gene

Domains & Families for LINC02177 Gene

Gene Families for LINC02177 Gene

genes like me logo Genes that share domains with LINC02177: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02177 Gene

Function for LINC02177 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02177 Gene

Localization for LINC02177 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02177 Gene

Pathways & Interactions for LINC02177 Gene

PathCards logo

SuperPathways for LINC02177 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02177 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02177 Gene

Drugs & Compounds for LINC02177 Gene

No Compound Related Data Available

Transcripts for LINC02177 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02177 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00004A6B42_9606 lncRNA 5301 4

RefSeq: NR_135195,

Ensembl: ENST00000564305 (view in UCSC) ,

LNCipedia: LINC02177:18,

NONCODE: NONHSAT140461.2,

URS0000EEB516_9606 lncRNA 2576 1

Ensembl: ENST00000659361 (view in UCSC) ,

URS0000EEDAAC_9606 lncRNA 1570 1

Ensembl: ENST00000667976 (view in UCSC) ,

URS0000EF4A75_9606 lncRNA 1331 1

Ensembl: ENST00000664064 (view in UCSC) ,

URS0000EEEC91_9606 lncRNA 1224 1

Ensembl: ENST00000658945 (view in UCSC) ,

LINC02177 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02177 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02177 Gene

No ASD Table

Relevant External Links for LINC02177 Gene

GeneLoc Exon Structure for
LINC02177

Expression for LINC02177 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02177 Gene

Orthologs for LINC02177 Gene

Evolution for LINC02177 Gene

ENSEMBL:
Gene Tree for LINC02177 (if available)
TreeFam:
Gene Tree for LINC02177 (if available)

No data available for Orthologs for LINC02177 Gene

Paralogs for LINC02177 Gene

No data available for Paralogs for LINC02177 Gene

Variants for LINC02177 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC02177 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for LINC02177 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02177

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02177 Gene

Disorders for LINC02177 Gene

Additional Disease Information for LINC02177

No disorders were found for LINC02177 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02177 Gene

Publications for LINC02177 Gene

No publications were found for LINC02177 Gene.

No data available for Mastermind for LINC02177 Gene

Products for LINC02177 Gene

Sources for LINC02177 Gene