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LINC02177 Gene(RNA Gene)

Long Intergenic Non-Protein Coding RNA 2177

GCID:
GC16P009356
GIFtS:
8
Genes Participants
UDN Logo

Aliases for LINC02177 Gene

Subcategory (RNA class) for LINC02177 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC02177 Gene

  • Long Intergenic Non-Protein Coding RNA 2177 2 3 5

External Ids for LINC02177 Gene

Summaries for LINC02177 Gene

GeneCards Summary for LINC02177 Gene

LINC02177 (Long Intergenic Non-Protein Coding RNA 2177) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC02177 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC02177 Gene

Genomics for LINC02177 Gene

GeneHancer (GH) Regulatory Elements for LINC02177 Gene

Promoters and enhancers for LINC02177 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH16J009364 Enhancer 0.8 ENCODE 0.4 +9.3 9311 0.2 CEBPG TFE3 SP1 ZNF644 RXRA CEBPA GATAD2A ATF7 RCOR2 FOXA2 GC16P009367 LINC02177 LOC101927026
GH16J009365 Enhancer 0.7 ENCODE 0.4 +9.9 9901 0.2 CEBPG TFE3 SP1 ZNF384 ZNF644 CEBPA ZNF7 FOXA2 JUND ZBTB33 GC16P009367 LINC02177 LOC101927026
GH16J009379 Enhancer 0.9 Ensembl ENCODE 0.3 +23.5 23512 1.4 CEBPG ZNF644 RXRA CEBPA ATF7 SOX13 CREB1 ATF3 CEBPB NFIL3 GC16M009377 GC16P009367 LINC02177 LOC101927026
GH16J009370 Enhancer 0.3 Ensembl 0.4 +14.6 14613 0.4 POLR2A GC16P009367 GC16M009377 LINC02177 LOC101927026
GH16J009373 Enhancer 0.3 Ensembl 0.4 +17.9 17913 0.6 ATF2 GC16M009377 GC16P009367 LINC02177 LOC101927026
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02177 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02177 Gene

Genomic Locations for LINC02177 Gene
chr16:9,355,588-9,408,093
(GRCh38/hg38)
Size:
52,506 bases
Orientation:
Plus strand
chr16:9,449,445-9,501,950
(GRCh37/hg19)
Size:
52,506 bases
Orientation:
Plus strand

Genomic View for LINC02177 Gene

Genes around LINC02177 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02177 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02177 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LINC02177 Gene

Proteins for LINC02177 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LINC02177 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02177 Gene

Domains & Families for LINC02177 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC02177 Gene

Function for LINC02177 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LINC02177 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02177 Gene

Localization for LINC02177 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02177 Gene

Pathways & Interactions for LINC02177 Gene

GeneAnalytics - gene set analysis. Cells, Diseases, Pathways, Function and Compounds, relevant to your gene set. Powered by GeneCards
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SuperPathways for LINC02177 Gene

No Data Available

Interacting Proteins for LINC02177 Gene

Gene Ontology (GO) - Biological Process for LINC02177 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02177 Gene

Drugs & Compounds for LINC02177 Gene

Products:

  1. Drug
GeneAnalytics - gene set analysis. Cells, Diseases, Pathways, Function and Compounds, relevant to your gene set. Powered by GeneCards
No Compound Related Data Available

Transcripts for LINC02177 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for LINC02177 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02177 Gene

No ASD Table

Relevant External Links for LINC02177 Gene

GeneLoc Exon Structure for
LINC02177
ECgene alternative splicing isoforms for
LINC02177

Expression for LINC02177 Gene

Products:

  1. Primer
GeneAnalytics - gene set analysis. Cells, Diseases, Pathways, Function and Compounds, relevant to your gene set. Powered by GeneCards
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02177 Gene

Orthologs for LINC02177 Gene

Evolution for LINC02177 Gene

ENSEMBL:
Gene Tree for LINC02177 (if available)
TreeFam:
Gene Tree for LINC02177 (if available)

No data available for Orthologs for LINC02177 Gene

Paralogs for LINC02177 Gene

No data available for Paralogs for LINC02177 Gene

Variants for LINC02177 Gene

VarElect - NGS phenotyper. Rapid prioritization of variants from NGS data powered by 100+ GeneCards sources

Sequence variations from dbSNP and Humsavar for LINC02177 Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs1000068646 -- 9,390,160(+) T/C intron_variant
rs1000129733 -- 9,394,995(+) G/T intron_variant
rs1000139946 -- 9,381,700(+) C/G/T intron_variant
rs1000212413 -- 9,364,232(+) T/A intron_variant
rs1000219398 -- 9,376,560(+) T/C intron_variant

Additional Variant Information for LINC02177 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02177

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02177 Gene

Disorders for LINC02177 Gene

Additional Disease Information for LINC02177

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for LINC02177 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02177 Gene

Publications for LINC02177 Gene

No publications were found for LINC02177 Gene.

No data available for External Links for LINC02177 Gene

Products for LINC02177 Gene

Sources for LINC02177 Gene

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