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Aliases for LINC02177 Gene
Subcategory (RNA class) for LINC02177 Gene
lncRNA
Aliases for LINC02177 Gene
External Ids for LINC02177 Gene
- HGNC: 53039
- NCBI Entrez Gene: 101927009
- Ensembl: ENSG00000261617
Summaries for LINC02177 Gene
GeneCards Summary for LINC02177 Gene
LINC02177 (Long Intergenic Non-Protein Coding RNA 2177) is an RNA Gene, and is affiliated with the lncRNA class.
Additional gene information for LINC02177 Gene
- HGNC (53039)
- NCBI Entrez Gene (101927009)
- Ensembl (ENSG00000261617)
- Open Targets Platform(ENSG00000261617)
- Search for LINC02177 at DataMed
- Search for LINC02177 at HumanCyc
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02177 Gene
Genomics for LINC02177 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for LINC02177 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH16J009364 | Enhancer | 0.8 | ENCODE | 0.4 | +9.3 | 9312 | 0.2 | CEBPA FOXA2 RXRA ZSCAN9 ZBTB33 BCL6 JUND KDM1A SOX5 HMG20A | piR-31937-084 LINC02177 LOC101927026 C16orf72 GRIN2A | |
| GH16J009365 | Enhancer | 0.7 | ENCODE | 0.4 | +9.9 | 9902 | 0.2 | CEBPA FOXA2 SMAD4 RXRA RARA ZBTB33 JUND HNF4A FOXA1 RAD21 | piR-31937-084 LINC02177 LOC101927026 C16orf72 GRIN2A | |
| GH16J009379 | Enhancer | 0.8 | Ensembl ENCODE | 0.3 | +23.2 | 23214 | 1.2 | CEBPA RXRA RARA JUND SOX5 HNF4A CEBPG ATF2 ZBTB21 JUN | piR-31937-084 HSALNG0109474 LINC02177 LOC101927026 C16orf72 GRIN2A | |
| GH16J009396 | Enhancer | 0.5 | Ensembl | 0.3 | +40.6 | 40614 | 0.4 | FOXA2 RXRA TBX3 FOXA1 HHEX RAD21 HNF4A SP1 | HSALNG0109474 RF01045-046 LINC02177 LOC101927026 C16orf72 GRIN2A | |
| GH16J009373 | Enhancer | 0.3 | Ensembl | 0.4 | +17.8 | 17814 | 0.8 | ATF2 RAD21 | piR-31937-084 LINC02177 HSALNG0109474 LOC101927026 C16orf72 GRIN2A |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LINC02177 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for LINC02177 Gene
Latest Assembly
- chr16:9,355,587-9,408,119
- (GRCh38/hg38)
- Size:
- 52,533 bases
- Orientation:
- Plus strand
Previous Assembly
- chr16:9,449,445-9,501,950
- (GRCh37/hg19 by Entrez Gene)
- Size:
- 52,506 bases
- Orientation:
- Plus strand
- chr16:9,449,445-9,501,950
- (GRCh37/hg19 by Ensembl)
- Size:
- 52,506 bases
- Orientation:
- Plus strand
Genomic View for LINC02177 Gene
Genes around LINC02177 on UCSC Golden Path with GeneCards custom track
LINC02177 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
- Cytogenetic band:
-
- 16p13.2 by HGNC
- 16p13.2 by Entrez Gene
- 16p13.2 by Ensembl
LINC02177 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LINC02177 Gene
Proteins for LINC02177 Gene
Post-translational modifications for LINC02177 Gene
No Post-translational modifications
No data available for DME Specific Peptides for LINC02177 Gene
Domains & Families for LINC02177 Gene
Gene Families for LINC02177 Gene
No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02177 Gene
Function for LINC02177 Gene
Phenotypes From GWAS Catalog for LINC02177 Gene
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Cell Lines for research
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02177 Gene
Localization for LINC02177 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02177 Gene
Transcripts for LINC02177 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02177 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS00004A6B42_9606 | lncRNA | 5301 | 4 |
RefSeq: NR_135195, Ensembl: ENST00000564305 (view in UCSC) , LNCipedia: LINC02177:18, NONCODE: NONHSAT140461.2, |
| URS0000EEB516_9606 | lncRNA | 2576 | 1 |
Ensembl: ENST00000659361 (view in UCSC) , |
| URS0000EEDAAC_9606 | lncRNA | 1570 | 1 |
Ensembl: ENST00000667976 (view in UCSC) , |
| URS0000EF4A75_9606 | lncRNA | 1331 | 1 |
Ensembl: ENST00000664064 (view in UCSC) , |
| URS0000EEEC91_9606 | lncRNA | 1224 | 1 |
Ensembl: ENST00000658945 (view in UCSC) , |
LINC02177 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for LINC02177 Gene
- 1 NCBI additional mRNA sequence :
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Relevant External Links for LINC02177 Gene
- GeneLoc Exon Structure for
- LINC02177
Expression for LINC02177 Gene
No Expression Related Data Available
No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02177 Gene
Orthologs for LINC02177 Gene
No data available for Orthologs for LINC02177 Gene
Paralogs for LINC02177 Gene
No data available for Paralogs for LINC02177 Gene
Variants for LINC02177 Gene
All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).
Additional Variant Information for LINC02177 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- LINC02177
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02177 Gene
Disorders for LINC02177 Gene
Additional Disease Information for LINC02177
- Atlas
- ATLAS of Genetics and Cytogenetics in Oncology and Haematology
- Open Targets Platform
- Open Targets Platform
No disorders were found for LINC02177 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02177 Gene
Publications for LINC02177 Gene
No publications were found for LINC02177 Gene.
No data available for Mastermind for LINC02177 Gene
Products for LINC02177 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LINC02177
- Origene Custom Protein Services for LINC02177
- Browse OriGene Inhibitory RNA Products For LINC02177
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for LINC02177
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For LINC02177
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for LINC02177
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for LINC02177
- Search GeneCopoeia for miRNA 3'UTR Target clone products for LINC02177
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for LINC02177
Sources for LINC02177 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM® (Updated: 05-Mar-2021)
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) MedlinePlus Genetics
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNAcentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Open Targets Platform
- (175) 5SRRNADB
- (176) snoDB
- (177) MirGeneDB