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Aliases for LINC02175 Gene

Subcategory (RNA class) for LINC02175 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for LINC02175 Gene

  • Long Intergenic Non-Protein Coding RNA 2175 2 3 5

External Ids for LINC02175 Gene

Summaries for LINC02175 Gene

GeneCards Summary for LINC02175 Gene

LINC02175 (Long Intergenic Non-Protein Coding RNA 2175) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC02175 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC02175 Gene

Genomics for LINC02175 Gene

GeneHancer (GH) Regulatory Elements for LINC02175 Gene

Promoters and enhancers for LINC02175 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16I025047 Enhancer 1.8 FANTOM5 Ensembl ENCODE dbSUPER 16.6 -16.6 -16620 5.3 HDGF PKNOX1 SMAD1 ARNT ZFP64 SIN3A FEZF1 ZNF2 POLR2B ZNF213 RBBP6 LOC100421173 ENSG00000263326 ZKSCAN2 SCML2P2 LOC554206 ENSG00000261669 HMGN2P3 LINC02175 LCMT1
GH16I024998 Enhancer 1.3 Ensembl ENCODE dbSUPER 16.4 -67.1 -67054 2.2 FOXA2 MLX ARID4B ZNF213 NFYC ZHX2 MXD4 MIER2 ZNF623 PPARG GC16M024999 PIR57337 LINC02175 ENSG00000263326 SCML2P2 RBBP6 ZKSCAN2 LOC100421173 LOC554206 ENSG00000261669
GH16I025256 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 10 +190.9 190886 2.8 MLX ZFP64 FEZF1 DMAP1 IRF4 ZNF213 ZNF416 ZNF143 ZNF548 SP3 ZKSCAN2 ENSG00000274925 GC16P025953 RBBP6 LOC554206 ENSG00000261669 SCML2P2 HMGN2P3 ENSG00000263326 ARHGAP17
GH16I025009 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE dbSUPER 6.7 -51.7 -51683 11.7 HDGF PKNOX1 FOXA2 SMAD1 ZFP64 ARID4B SIN3A IRF4 YY1 SLC30A9 ARHGAP17 GC16P025016 PIR39777 LOC100421171 PIR34579 RBBP6 LOC554206 LINC02175 ENSG00000261669 PIR57337
GH16I025059 Promoter/Enhancer 2.1 FANTOM5 Ensembl ENCODE dbSUPER 7.1 -3.0 -2956 8 HDGF PKNOX1 ATF1 ARID4B SIN3A ZNF48 ETS1 YY1 POLR2B GLIS2 ARHGAP17 LCMT1 RBBP6 LINC02175 LOC100421173 LCMT1-AS1 SLC5A11 GC16P025908 GC16P025922 PIR48289
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC02175 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02175 Gene

Genomic Locations for LINC02175 Gene
2,019 bases
Plus strand

Genomic View for LINC02175 Gene

Genes around LINC02175 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02175 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02175 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02175 Gene

Proteins for LINC02175 Gene

Post-translational modifications for LINC02175 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02175 Gene

Domains & Families for LINC02175 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC02175 Gene

Function for LINC02175 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02175 Gene

Localization for LINC02175 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02175 Gene

Pathways & Interactions for LINC02175 Gene

SuperPathways for LINC02175 Gene

No Data Available

Interacting Proteins for LINC02175 Gene

Gene Ontology (GO) - Biological Process for LINC02175 Gene


No data available for Pathways by source and SIGNOR curated interactions for LINC02175 Gene

Drugs & Compounds for LINC02175 Gene

No Compound Related Data Available

Transcripts for LINC02175 Gene

mRNA/cDNA for LINC02175 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02175 Gene

No ASD Table

Relevant External Links for LINC02175 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for LINC02175 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02175 Gene

Orthologs for LINC02175 Gene

Evolution for LINC02175 Gene

Gene Tree for LINC02175 (if available)
Gene Tree for LINC02175 (if available)

No data available for Orthologs for LINC02175 Gene

Paralogs for LINC02175 Gene

No data available for Paralogs for LINC02175 Gene

Variants for LINC02175 Gene

Sequence variations from dbSNP and Humsavar for LINC02175 Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs1000253313 -- 25,067,611(+) A/C non_coding_transcript_variant
rs1000539502 -- 25,067,588(+) G/A non_coding_transcript_variant
rs1000969657 -- 25,069,344(+) T/C downstream_transcript_variant
rs1001258794 -- 25,068,062(+) T/C non_coding_transcript_variant
rs1001316802 -- 25,067,066(+) A/G non_coding_transcript_variant

Additional Variant Information for LINC02175 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02175 Gene

Disorders for LINC02175 Gene

Additional Disease Information for LINC02175

No disorders were found for LINC02175 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02175 Gene

Publications for LINC02175 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for LINC02175 Gene

Sources for LINC02175 Gene

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