LINC02174 Gene (RNA Gene)

Long Intergenic Non-Protein Coding RNA 2174

GC04M171536
GIFtS:
8
See more...

Aliases for LINC02174 Gene

Data sources for LINC02174 Gene:

Subcategory (RNA class) for LINC02174 Gene

lncRNA

Aliases for LINC02174 Gene

External Ids for LINC02174 Gene

Previous GeneCards Identifiers for LINC02174 Gene

  • GC04M171606

Summaries for LINC02174 Gene

GeneCards Summary for LINC02174 Gene

LINC02174 (Long Intergenic Non-Protein Coding RNA 2174) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02174 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02174 Gene

Genomics for LINC02174 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for LINC02174 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH04J171644 Enhancer 0.6 ENCODE 0.4 +12.0 11954 0.2 BCL11A EBF1 ASH2L ELF1 IKZF1 ATF7 IKZF2 MTA2 EED RUNX3 LINC02174 HSALNG0038555 GALNTL6 HSALNG0038550
GH04J171629 Enhancer 0.6 Ensembl 0.3 +27.4 27418 0.4 BCL11A ZNF316 STAT5A NFATC1 ATF2 JUNB ARID3A IKZF1 ATF7 TBL1XR1 HSALNG0038555 LINC02174 ENSG00000251176 HSALNG0038550 GALNTL6
GH04J171636 Enhancer 0.2 Ensembl 0.3 +20.1 20118 0.2 HSALNG0038555 LINC02174 HSALNG0038550 GALNTL6
GH04J171551 Enhancer 0.3 Ensembl 0.1 +105.2 105218 0.4 ZNF316 NFE2 HSALNG0038553 ENSG00000287210 LOC105377535 HSALNG0038550 LINC02174 GALNTL6
GH04J171578 Enhancer 0.2 Ensembl 0.2 +78.2 78218 0.4 ENSG00000251176 HSALNG0038555 LINC02174 LOC105377535 HSALNG0038550 GALNTL6
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02174 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02174 Gene

Latest Assembly
chr4:171,536,034-171,656,819
(GRCh38/hg38)
Size:
120,786 bases
Orientation:
Minus strand

Previous Assembly
chr4:172,523,834-172,559,914
(GRCh37/hg19 by Entrez Gene)
Size:
36,081 bases
Orientation:
Minus strand

chr4:172,523,834-172,559,914
(GRCh37/hg19 by Ensembl)
Size:
36,081 bases
Orientation:
Minus strand

Genomic View for LINC02174 Gene

Genes around LINC02174 on UCSC Golden Path with GeneCards custom track
LINC02174 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC02174 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02174 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LINC02174 Gene

Proteins for LINC02174 Gene

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  1. Antibodies for research
  2. Protein products for research
  3. Assay products for research

Post-translational modifications for LINC02174 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02174 Gene

Domains & Families for LINC02174 Gene

Gene Families for LINC02174 Gene

HGNC:
genes like me logo Genes that share domains with LINC02174: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02174 Gene

Function for LINC02174 Gene

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  1. Animal Models for research
  2. CRISPR products for research
  3. miRNA products for research
  4. Inhibitory RNAs for research
  5. Clone products for research
  6. Cell Lines for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02174 Gene

Localization for LINC02174 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02174 Gene

Pathways & Interactions for LINC02174 Gene

PathCards logo

SuperPathways for LINC02174 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02174 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02174 Gene

Drugs & Compounds for LINC02174 Gene

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  1. Drug products for research
No Compound Related Data Available

Transcripts for LINC02174 Gene

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  3. Inhibitory RNAs for research
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Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02174 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000391A04_9606 lncRNA 553 5

RefSeq: NR_147157,

Ensembl: ENST00000508977 (view in UCSC) ,

LncBook: HSALNT0080785,

LNCipedia: LINC02174:5,

NONCODE: NONHSAT099202.2,

URS0000E7B8AD_9606 lncRNA 1644 1

Ensembl: ENST00000651666 (view in UCSC) ,

URS00008B373E_9606 lncRNA 267 3

LncBook: HSALNT0080790,

LNCipedia: LINC02174:4,

NONCODE: NONHSAT099203.2,

URS00009B3D92_9606 lncRNA 639 2

LncBook: HSALNT0080786,

NONCODE: NONHSAT200682.1,

URS0001BD1F68_9606 lncRNA 7757 1

LncBook: HSALNT0080782,

LINC02174 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02174 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02174 Gene

No ASD Table

Relevant External Links for LINC02174 Gene

GeneLoc Exon Structure for
LINC02174

Expression for LINC02174 Gene

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  1. Primer products for research
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02174 Gene

Orthologs for LINC02174 Gene

Evolution for LINC02174 Gene

ENSEMBL:
Gene Tree for LINC02174 (if available)
TreeFam:
Gene Tree for LINC02174 (if available)

No data available for Orthologs for LINC02174 Gene

Paralogs for LINC02174 Gene

No data available for Paralogs for LINC02174 Gene

Variants for LINC02174 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC02174 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for LINC02174 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02174

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02174 Gene

Disorders for LINC02174 Gene

Additional Disease Information for LINC02174

Atlas
ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for LINC02174 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02174 Gene

Publications for LINC02174 Gene

No publications were found for LINC02174 Gene.

ExternalLinks

View latest publications for LINC02174 gene in Mastermind

Products for LINC02174 Gene

Sources for LINC02174 Gene