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Aliases for LINC02166 Gene
Data sources for LINC02166 Gene:
Subcategory (RNA class) for LINC02166 Gene
lncRNA
Aliases for LINC02166 Gene
External Ids for LINC02166 Gene
- HGNC: 53027
- NCBI Entrez Gene: 105371416
- Ensembl: ENSG00000260259
Summaries for LINC02166 Gene
GeneCards Summary for LINC02166 Gene
LINC02166 (Long Intergenic Non-Protein Coding RNA 2166) is an RNA Gene, and is affiliated with the lncRNA class.
Additional gene information for LINC02166 Gene
- HGNC (53027)
- NCBI Entrez Gene (105371416)
- Ensembl (ENSG00000260259)
- Open Targets Platform(ENSG00000260259)
- Search for LINC02166 at DataMed
- Search for LINC02166 at HumanCyc
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02166 Gene
Genomics for LINC02166 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for LINC02166 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH16J089686 | Promoter/Enhancer | 2 | EPDnew Ensembl ENCODE CraniofacialAtlas | 260.6 | -0.7 | -676 | 2.5 | CHD2 TBP SP1 MXD4 CEBPA NR2C1 MNT IKZF1 SMAD5 ETS1 | CDK10 LINC02166 HSALNG0113633 NONHSAG020359.2 DPEP1 ZNF276 VPS9D1 FANCA SPATA2L ENSG00000275734 | |
| GH16J089696 | Enhancer | 0.8 | Ensembl ENCODE | 11.2 | -10.4 | -10402 | 1.6 | POLR2A MYNN BHLHE40 SUPT5H SCRT1 NR2F1 GLIS1 KLF1 CREM GLIS2 | piR-36239 CDK10 LINC02166 HSALNG0113634 SPATA2L | |
| GH16J088766 | Enhancer | 1.5 | FANTOM5 ENCODE dbSUPER | 4.3 | +915.5 | 915470 | 8.5 | ZSCAN16 TBP ZBTB10 MXD4 FEZF1 CEBPA MNT IKZF1 SMAD5 IRF2 | PIEZO1 APRT RNF166 VPS9D1-AS1 LINC02166 HSALNG0113537 CTU2 | |
| GH16J089187 | Enhancer | 1 | Ensembl ENCODE | 5.5 | +498.8 | 498820 | 3.6 | ZSCAN16 FOXA1 ZFP64 ZIC2 FOXA2 ZEB2 ZNF148 EBF1 SMARCA5 SP2 | CDH15 ENSG00000259877 ACSF3 LINC00304 SLC22A31 SNORD68 RPL13 ANKRD11 ENSG00000260121 APRT |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LINC02166 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for LINC02166 Gene
Latest Assembly
- chr16:89,682,507-89,686,599
- (GRCh38/hg38)
- Size:
- 4,093 bases
- Orientation:
- Minus strand
Previous Assembly
- chr16:89,749,028-89,752,977
- (GRCh37/hg19 by Ensembl)
- Size:
- 3,950 bases
- Orientation:
- Minus strand
Genomic View for LINC02166 Gene
Genes around LINC02166 on UCSC Golden Path with GeneCards custom track
LINC02166 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
- Cytogenetic band:
-
- 16q24.3 by HGNC
- 16q24.3 by Entrez Gene
- 16q24.3 by Ensembl
LINC02166 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LINC02166 Gene
Proteins for LINC02166 Gene
Post-translational modifications for LINC02166 Gene
No Post-translational modifications
No data available for DME Specific Peptides for LINC02166 Gene
Domains & Families for LINC02166 Gene
Gene Families for LINC02166 Gene
No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02166 Gene
Function for LINC02166 Gene
Phenotypes From GWAS Catalog for LINC02166 Gene
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Cell Lines for research
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02166 Gene
Localization for LINC02166 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02166 Gene
Transcripts for LINC02166 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02166 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS00007D06F3_9606 | lncRNA | 721 | 3 |
Ensembl: ENST00000567544 (view in UCSC) , LNCipedia: LINC02166:6, NONCODE: NONHSAT174226.1, |
| URS00009B6FF0_9606 | lncRNA | 786 | 3 |
LncBook: HSALNT0235528, LNCipedia: LINC02166:5, NONCODE: NONHSAT144566.2, |
| URS00009B4F11_9606 | lncRNA | 300 | 2 |
LncBook: HSALNT0235530, NONCODE: NONHSAT174227.1, |
| URS0001BD82AC_9606 | lncRNA | 782 | 1 |
LncBook: HSALNT0235528, |
| URS0000D57D0B_9606 | lncRNA | 457 | 1 |
LNCipedia: LINC02166:7, |
LINC02166 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for LINC02166 Gene
- 2 NCBI additional mRNA sequence :
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Relevant External Links for LINC02166 Gene
- GeneLoc Exon Structure for
- LINC02166
Expression for LINC02166 Gene
No Expression Related Data Available
No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02166 Gene
Orthologs for LINC02166 Gene
No data available for Orthologs for LINC02166 Gene
Paralogs for LINC02166 Gene
No data available for Paralogs for LINC02166 Gene
Variants for LINC02166 Gene
All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).
Additional Variant Information for LINC02166 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- LINC02166
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02166 Gene
Disorders for LINC02166 Gene
Additional Disease Information for LINC02166
- Open Targets Platform
- Open Targets Platform
No disorders were found for LINC02166 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02166 Gene
Publications for LINC02166 Gene
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3
No data available for Mastermind for LINC02166 Gene
Products for LINC02166 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LINC02166
- Origene Custom Protein Services for LINC02166
- Browse OriGene Inhibitory RNA Products For LINC02166
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for LINC02166
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For LINC02166
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for LINC02166
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for LINC02166
- Search GeneCopoeia for miRNA 3'UTR Target clone products for LINC02166
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for LINC02166
Sources for LINC02166 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM® (Updated: 05-Mar-2021)
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) MedlinePlus Genetics
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNAcentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Open Targets Platform
- (175) 5SRRNADB
- (176) snoDB
- (177) MirGeneDB