Aliases for LINC02166 Gene

Data sources for LINC02166 Gene:

Subcategory (RNA class) for LINC02166 Gene

lncRNA

Aliases for LINC02166 Gene

External Ids for LINC02166 Gene

Summaries for LINC02166 Gene

GeneCards Summary for LINC02166 Gene

LINC02166 (Long Intergenic Non-Protein Coding RNA 2166) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02166 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02166 Gene

Genomics for LINC02166 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02166 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J089686 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 260.6 -0.7 -676 2.5 CHD2 TBP SP1 MXD4 CEBPA NR2C1 MNT IKZF1 SMAD5 ETS1 CDK10 LINC02166 HSALNG0113633 NONHSAG020359.2 DPEP1 ZNF276 VPS9D1 FANCA SPATA2L ENSG00000275734
GH16J089696 Enhancer 0.8 Ensembl ENCODE 11.2 -10.4 -10402 1.6 POLR2A MYNN BHLHE40 SUPT5H SCRT1 NR2F1 GLIS1 KLF1 CREM GLIS2 piR-36239 CDK10 LINC02166 HSALNG0113634 SPATA2L
GH16J088766 Enhancer 1.5 FANTOM5 ENCODE dbSUPER 4.3 +915.5 915470 8.5 ZSCAN16 TBP ZBTB10 MXD4 FEZF1 CEBPA MNT IKZF1 SMAD5 IRF2 PIEZO1 APRT RNF166 VPS9D1-AS1 LINC02166 HSALNG0113537 CTU2
GH16J089187 Enhancer 1 Ensembl ENCODE 5.5 +498.8 498820 3.6 ZSCAN16 FOXA1 ZFP64 ZIC2 FOXA2 ZEB2 ZNF148 EBF1 SMARCA5 SP2 CDH15 ENSG00000259877 ACSF3 LINC00304 SLC22A31 SNORD68 RPL13 ANKRD11 ENSG00000260121 APRT
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02166 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02166 Gene

Latest Assembly
chr16:89,682,507-89,686,599
(GRCh38/hg38)
Size:
4,093 bases
Orientation:
Minus strand

Previous Assembly
chr16:89,749,028-89,752,977
(GRCh37/hg19 by Ensembl)
Size:
3,950 bases
Orientation:
Minus strand

Genomic View for LINC02166 Gene

Genes around LINC02166 on UCSC Golden Path with GeneCards custom track
LINC02166 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC02166 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02166 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02166 Gene

Proteins for LINC02166 Gene

Post-translational modifications for LINC02166 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02166 Gene

Domains & Families for LINC02166 Gene

Gene Families for LINC02166 Gene

genes like me logo Genes that share domains with LINC02166: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02166 Gene

Function for LINC02166 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02166 Gene

Localization for LINC02166 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02166 Gene

Pathways & Interactions for LINC02166 Gene

PathCards logo

SuperPathways for LINC02166 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02166 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02166 Gene

Drugs & Compounds for LINC02166 Gene

No Compound Related Data Available

Transcripts for LINC02166 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02166 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00007D06F3_9606 lncRNA 721 3

Ensembl: ENST00000567544 (view in UCSC) ,

LNCipedia: LINC02166:6,

NONCODE: NONHSAT174226.1,

URS00009B6FF0_9606 lncRNA 786 3

LncBook: HSALNT0235528,

LNCipedia: LINC02166:5,

NONCODE: NONHSAT144566.2,

URS00009B4F11_9606 lncRNA 300 2

LncBook: HSALNT0235530,

NONCODE: NONHSAT174227.1,

URS0001BD82AC_9606 lncRNA 782 1

LncBook: HSALNT0235528,

URS0000D57D0B_9606 lncRNA 457 1

LNCipedia: LINC02166:7,

LINC02166 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02166 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02166 Gene

No ASD Table

Relevant External Links for LINC02166 Gene

GeneLoc Exon Structure for
LINC02166

Expression for LINC02166 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02166 Gene

Orthologs for LINC02166 Gene

Evolution for LINC02166 Gene

ENSEMBL:
Gene Tree for LINC02166 (if available)
TreeFam:
Gene Tree for LINC02166 (if available)

No data available for Orthologs for LINC02166 Gene

Paralogs for LINC02166 Gene

No data available for Paralogs for LINC02166 Gene

Variants for LINC02166 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC02166 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for LINC02166 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02166

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02166 Gene

Disorders for LINC02166 Gene

Additional Disease Information for LINC02166

Open Targets Platform
Open Targets Platform

No disorders were found for LINC02166 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02166 Gene

Publications for LINC02166 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for LINC02166 Gene

Products for LINC02166 Gene

Sources for LINC02166 Gene