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Aliases for LINC02166 Gene

Subcategory (RNA class) for LINC02166 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC02166 Gene

  • Long Intergenic Non-Protein Coding RNA 2166 2 3 5

External Ids for LINC02166 Gene

Summaries for LINC02166 Gene

GeneCards Summary for LINC02166 Gene

LINC02166 (Long Intergenic Non-Protein Coding RNA 2166) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC02166 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC02166 Gene

Genomics for LINC02166 Gene

GeneHancer (GH) Regulatory Elements for LINC02166 Gene

Promoters and enhancers for LINC02166 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16I089686 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 560.7 -0.7 -742 2.5 PKNOX1 FOXA2 MLX ARID4B SIN3A DMAP1 YY1 SLC30A9 POLR2B ZNF207 CDK10 LINC02166 DPEP1 VPS9D1 ZNF276 FANCA PIR59284
GH16I088766 Enhancer 1.8 FANTOM5 Ensembl ENCODE dbSUPER 4.3 +915.4 915440 8.5 HDGF PKNOX1 CLOCK SMAD1 ARNT ARID4B NEUROD1 SIN3A FEZF1 ZNF2 PIEZO1 APRT RNF166 VPS9D1-AS1 LINC02166 LOC339059
GH16I089696 Enhancer 0.6 ENCODE 11.2 -10.3 -10343 0.8 SCRT1 KLF1 NR2F1 SMARCB1 HIC1 POLR2A GLIS1 SCRT2 RUNX3 SUPT5H PIR59284 CDK10 LINC02166 SPATA2L
GH16I089688 Enhancer 0.6 ENCODE 0.8 -2.1 -2099 0.2 SOX5 ZNF792 TEAD1 HLF THRB TEAD3 NFIL3 CEBPA KDM1A CHMP1A LINC02166 PIR59284 CDK10
GH16I089694 Enhancer 0.7 ENCODE 0.4 -8.9 -8946 1.1 TFAP4 KLF1 SAP130 ZFP64 DMAP1 POLR2A NR2F6 ZNF600 KLF8 ZNF3 CDK10 PIR59284 LINC02166
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC02166 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02166 Gene

Genomic Locations for LINC02166 Gene
chr16:89,682,507-89,686,569
(GRCh38/hg38)
Size:
4,063 bases
Orientation:
Minus strand
chr16:89,749,028-89,752,977
(GRCh37/hg19)

Genomic View for LINC02166 Gene

Genes around LINC02166 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02166 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02166 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02166 Gene

Proteins for LINC02166 Gene

Post-translational modifications for LINC02166 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02166 Gene

Domains & Families for LINC02166 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC02166 Gene

Function for LINC02166 Gene

Phenotypes From GWAS Catalog for LINC02166 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02166 Gene

Localization for LINC02166 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02166 Gene

Pathways & Interactions for LINC02166 Gene

SuperPathways for LINC02166 Gene

No Data Available

Interacting Proteins for LINC02166 Gene

Gene Ontology (GO) - Biological Process for LINC02166 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02166 Gene

Drugs & Compounds for LINC02166 Gene

No Compound Related Data Available

Transcripts for LINC02166 Gene

mRNA/cDNA for LINC02166 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02166 Gene

No ASD Table

Relevant External Links for LINC02166 Gene

GeneLoc Exon Structure for
LINC02166
ECgene alternative splicing isoforms for
LINC02166

Expression for LINC02166 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02166 Gene

Orthologs for LINC02166 Gene

Evolution for LINC02166 Gene

ENSEMBL:
Gene Tree for LINC02166 (if available)
TreeFam:
Gene Tree for LINC02166 (if available)

No data available for Orthologs for LINC02166 Gene

Paralogs for LINC02166 Gene

No data available for Paralogs for LINC02166 Gene

Variants for LINC02166 Gene

Sequence variations from dbSNP and Humsavar for LINC02166 Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs1000199180 -- 89,687,994(-) T/C upstream_transcript_variant
rs1000406312 -- 89,684,761(-) A/C intron_variant
rs1000426325 -- 89,686,656(-) G/A upstream_transcript_variant
rs1000430277 -- 89,683,681(-) C/A intron_variant
rs1000882085 -- 89,686,484(-) C/A non_coding_transcript_variant

Additional Variant Information for LINC02166 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02166

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02166 Gene

Disorders for LINC02166 Gene

No disorders were found for LINC02166 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02166 Gene

Publications for LINC02166 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for LINC02166 Gene

Sources for LINC02166 Gene

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