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Aliases for LINC02164 Gene

Subcategory (RNA class) for LINC02164 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC02164 Gene

  • Long Intergenic Non-Protein Coding RNA 2164 2 3 5

External Ids for LINC02164 Gene

Summaries for LINC02164 Gene

GeneCards Summary for LINC02164 Gene

LINC02164 (Long Intergenic Non-Protein Coding RNA 2164) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC02164 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC02164 Gene

Genomics for LINC02164 Gene

GeneHancer (GH) Regulatory Elements for LINC02164 Gene

Promoters and enhancers for LINC02164 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16I005207 Promoter 0.8 Ensembl 0.4 +13.5 13491 0.4 GABPB1 NR2C1 GABPA NR2C2 GC16P005208 NAGPA GC16P005204 LOC105371067 LINC02164
GH16I005208 Enhancer 0.6 ENCODE 0.4 +12.4 12397 0.2 USF1 HCFC1 SUZ12 NFYC SIX5 USF2 ZEB2 MITF ZNF217 GABPB1 GC16P005208 GC16P005204 LOC105371067 LINC02164
GH16I005213 Enhancer 0.2 ENCODE 0.4 +7.3 7302 0.4 LINC02164 GC16P005208 LOC105371067
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC02164 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02164 Gene

Genomic Locations for LINC02164 Gene
chr16:5,213,787-5,220,692
(GRCh38/hg38)
Size:
6,906 bases
Orientation:
Minus strand
chr16:5,265,395-5,270,595
(GRCh37/hg19)

Genomic View for LINC02164 Gene

Genes around LINC02164 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02164 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02164 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02164 Gene

Proteins for LINC02164 Gene

Post-translational modifications for LINC02164 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02164 Gene

Domains & Families for LINC02164 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC02164 Gene

Function for LINC02164 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02164 Gene

Localization for LINC02164 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02164 Gene

Pathways & Interactions for LINC02164 Gene

SuperPathways for LINC02164 Gene

No Data Available

Interacting Proteins for LINC02164 Gene

Gene Ontology (GO) - Biological Process for LINC02164 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02164 Gene

Drugs & Compounds for LINC02164 Gene

No Compound Related Data Available

Transcripts for LINC02164 Gene

mRNA/cDNA for LINC02164 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02164 Gene

No ASD Table

Relevant External Links for LINC02164 Gene

GeneLoc Exon Structure for
LINC02164
ECgene alternative splicing isoforms for
LINC02164

Expression for LINC02164 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02164 Gene

Orthologs for LINC02164 Gene

Evolution for LINC02164 Gene

ENSEMBL:
Gene Tree for LINC02164 (if available)
TreeFam:
Gene Tree for LINC02164 (if available)

No data available for Orthologs for LINC02164 Gene

Paralogs for LINC02164 Gene

No data available for Paralogs for LINC02164 Gene

Variants for LINC02164 Gene

Sequence variations from dbSNP and Humsavar for LINC02164 Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs1000401063 -- 5,216,398(-) C/G intron_variant
rs1000843932 -- 5,219,177(-) T/C intron_variant
rs1000933223 -- 5,219,303(-) G/A intron_variant
rs1001296642 -- 5,216,676(-) C/T intron_variant
rs1001559547 -- 5,222,424(-) C/T upstream_transcript_variant

Additional Variant Information for LINC02164 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02164

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02164 Gene

Disorders for LINC02164 Gene

No disorders were found for LINC02164 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02164 Gene

Publications for LINC02164 Gene

No publications were found for LINC02164 Gene.

Products for LINC02164 Gene

Sources for LINC02164 Gene

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