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Aliases for LINC02156 Gene

Subcategory (RNA class) for LINC02156 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC02156 Gene

  • Long Intergenic Non-Protein Coding RNA 2156 2 3 5

External Ids for LINC02156 Gene

Summaries for LINC02156 Gene

GeneCards Summary for LINC02156 Gene

LINC02156 (Long Intergenic Non-Protein Coding RNA 2156) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC02156 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC02156 Gene

Genomics for LINC02156 Gene

GeneHancer (GH) Regulatory Elements for LINC02156 Gene

Promoters and enhancers for LINC02156 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J047376 Promoter/Enhancer 1.5 Ensembl ENCODE 600.7 +0.6 604 2.7 ZKSCAN8 CBFA2T2 GTF2F1 BACH1 MAFK TRIM24 SP1 ZNF639 SMARCA4 MTA1 LINC02156 ENSG00000199566 AMIGO2 LINC02416 PCED1B GC12M047416 PIR61358
GH12J047408 Enhancer 1.1 Ensembl ENCODE dbSUPER 5.9 +33.4 33417 8.6 CC2D1A ELF1 RAD21 IKZF1 REST ZSCAN4 CTCF ZNF24 SCRT2 RFX1 LINC02156 PFKM GC12M047416 PIR61358
GH12J047392 Enhancer 1.3 FANTOM5 ENCODE dbSUPER 0.4 +16.0 15952 1.7 CBFA2T2 ZNF121 TRIM24 SMARCA4 DPF2 PRDM10 PKNOX1 LEF1 HDAC1 ZNF341 ENSG00000199566 AMIGO2 LINC02156 PIR61358 GC12M047416
GH12J047401 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 0.3 +23.7 23717 1.6 CC2D1A CEBPB SOX6 MGA ZNF766 EHMT2 MNT CHAMP1 MAX L3MBTL2 AMIGO2 ASB8 GC12M047416 PIR61358 LINC02156
GH12J047390 Enhancer 1 FANTOM5 ENCODE dbSUPER 0.4 +14.0 13952 1.3 RELA ZNF366 FEZF1 ZBTB40 ENSG00000199566 AMIGO2 PCED1B LINC02156 PIR61358 GC12M047416
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02156 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02156 Gene

Genomic Locations for LINC02156 Gene
chr12:47,377,683-47,420,179
(GRCh38/hg38)
Size:
42,497 bases
Orientation:
Plus strand
chr12:47,808,791-47,813,962
(GRCh37/hg19)
Size:
5,172 bases
Orientation:
Plus strand

Genomic View for LINC02156 Gene

Genes around LINC02156 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02156 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02156 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02156 Gene

Proteins for LINC02156 Gene

Post-translational modifications for LINC02156 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02156 Gene

Domains & Families for LINC02156 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC02156 Gene

Function for LINC02156 Gene

Phenotypes From GWAS Catalog for LINC02156 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02156 Gene

Localization for LINC02156 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02156 Gene

Pathways & Interactions for LINC02156 Gene

PathCards logo

SuperPathways for LINC02156 Gene

No Data Available

Interacting Proteins for LINC02156 Gene

Gene Ontology (GO) - Biological Process for LINC02156 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02156 Gene

Drugs & Compounds for LINC02156 Gene

No Compound Related Data Available

Transcripts for LINC02156 Gene

mRNA/cDNA for LINC02156 Gene

(1) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(4) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02156 Gene

No ASD Table

Relevant External Links for LINC02156 Gene

GeneLoc Exon Structure for
LINC02156
ECgene alternative splicing isoforms for
LINC02156

Expression for LINC02156 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02156 Gene

Orthologs for LINC02156 Gene

Evolution for LINC02156 Gene

ENSEMBL:
Gene Tree for LINC02156 (if available)
TreeFam:
Gene Tree for LINC02156 (if available)

No data available for Orthologs for LINC02156 Gene

Paralogs for LINC02156 Gene

No data available for Paralogs for LINC02156 Gene

Variants for LINC02156 Gene

Sequence variations from dbSNP and Humsavar for LINC02156 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000208233 -- 47,416,520(+) G/A intron_variant
rs1001035366 -- 47,420,144(+) C/G non_coding_transcript_variant
rs1001100931 -- 47,415,797(+) G/A intron_variant
rs1001153296 -- 47,415,497(+) T/C intron_variant
rs1001265065 -- 47,414,979(+) G/A upstream_transcript_variant

Additional Variant Information for LINC02156 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02156

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02156 Gene

Disorders for LINC02156 Gene

Additional Disease Information for LINC02156

No disorders were found for LINC02156 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02156 Gene

Publications for LINC02156 Gene

  1. Identification of a RNA-Seq Based 8-Long Non-Coding RNA Signature Predicting Survival in Esophageal Cancer. (PMID: 28028307) Fan Q … Liu B (Medical science monitor : international medical journal of experimental and clinical research 2016) 2 3 58

Products for LINC02156 Gene

Sources for LINC02156 Gene

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