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Aliases for LINC02154 Gene
Subcategory (RNA class) for LINC02154 Gene
lncRNA
Aliases for LINC02154 Gene
External Ids for LINC02154 Gene
- HGNC: 53015
- NCBI Entrez Gene: 109729169
- Ensembl: ENSG00000235385
Summaries for LINC02154 Gene
GeneCards Summary for LINC02154 Gene
LINC02154 (Long Intergenic Non-Protein Coding RNA 2154) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC02154 include Esophageal Cancer.
Additional gene information for LINC02154 Gene
- HGNC (53015)
- NCBI Entrez Gene (109729169)
- Ensembl (ENSG00000235385)
- Open Targets Platform(ENSG00000235385)
- Search for LINC02154 at DataMed
- Search for LINC02154 at HumanCyc
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02154 Gene
Genomics for LINC02154 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for LINC02154 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH0XJ013303 | Promoter/Enhancer | 0.8 | EPDnew Ensembl | 259.6 | -1.5 | -1548 | 3.6 | FOSL1 SPI1 POLR2A SOX6 MNT | LINC02154 HSALNG0136704 GS1-600G8.3 ATXN3L lnc-ATXN3L-4 RF00017-8162 FAM9C | |
| GH0XJ013282 | Enhancer | 1.2 | FANTOM5 Ensembl ENCODE | 6.5 | +17.9 | 17939 | 6.6 | IKZF1 IRF2 CEBPB ARNT SIN3A ZNF395 CTCF VEZF1 EP300 ZEB2 | LINC02154 lnc-EGFL6-12 lnc-TMSB4X-8 ATXN3L lnc-TMSB4X-7 RF00017-8162 FAM9C | |
| GH0XJ013368 | Enhancer | 0.6 | Ensembl dbSUPER | 7.7 | -65.4 | -65448 | 3 | FOXA2 FOXA1 ATF7 | LOC105373137 LINC02154 GPX1P1 LINC01203 ATXN3L EGFL6 | |
| GH0XJ013344 | Enhancer | 0.5 | Ensembl | 7.1 | -41.9 | -41948 | 2.4 | IKZF1 NR2F1 ZNF687 MTA2 IKZF2 RELB GATAD2B | LINC02154 RF00017-8162 piR-32214-703 LINC01203 ATXN3L EGFL6 | |
| GH0XJ013382 | Enhancer | 0.5 | Ensembl | 5 | -79.9 | -79948 | 1.2 | SPI1 RAD51 ZNF687 ZNF143 ZBTB40 | LINC02154 GPX1P1 piR-47675-124 LOC105373137 LINC01203 ATXN3L EGFL6 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LINC02154 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for LINC02154 Gene
Latest Assembly
- chrX:13,266,046-13,303,453
- (GRCh38/hg38)
- Size:
- 37,408 bases
- Orientation:
- Minus strand
Previous Assembly
- chrX:13,284,167-13,321,571
- (GRCh37/hg19 by Entrez Gene)
- Size:
- 37,405 bases
- Orientation:
- Minus strand
- chrX:13,284,167-13,321,571
- (GRCh37/hg19 by Ensembl)
- Size:
- 37,405 bases
- Orientation:
- Minus strand
Genomic View for LINC02154 Gene
Genes around LINC02154 on UCSC Golden Path with GeneCards custom track
LINC02154 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
- Cytogenetic band:
-
- Xp22.2 by HGNC
- Xp22.2 by Entrez Gene
- Xp22.2 by Ensembl
LINC02154 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LINC02154 Gene
Proteins for LINC02154 Gene
Post-translational modifications for LINC02154 Gene
No Post-translational modifications
No data available for DME Specific Peptides for LINC02154 Gene
Domains & Families for LINC02154 Gene
Gene Families for LINC02154 Gene
No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02154 Gene
Function for LINC02154 Gene
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Cell Lines for research
No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02154 Gene
Localization for LINC02154 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02154 Gene
Transcripts for LINC02154 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02154 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS000047B8CD_9606 | lncRNA | 1497 | 3 |
Ensembl: ENST00000412485 (view in UCSC) , LNCipedia: LINC02154:7, NONCODE: NONHSAT136291.2, |
| URS00000AF62D_9606 | lncRNA | 927 | 3 |
Ensembl: ENST00000443965 (view in UCSC) , LNCipedia: LINC02154:5, NONCODE: NONHSAT136293.2, |
| URS0000BC43DC_9606 | lncRNA | 1421 | 1 |
RefSeq: NR_146309, |
| URS0000EF3C1B_9606 | lncRNA | 1387 | 1 |
Ensembl: ENST00000670053 (view in UCSC) , |
| URS00008BB0AC_9606 | lncRNA | 2413 | 2 |
LNCipedia: LINC02154:6, NONCODE: NONHSAT136290.2, |
LINC02154 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for LINC02154 Gene
- 4 NCBI additional mRNA sequence :
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Relevant External Links for LINC02154 Gene
- GeneLoc Exon Structure for
- LINC02154
Expression for LINC02154 Gene
No Expression Related Data Available
No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02154 Gene
Orthologs for LINC02154 Gene
No data available for Orthologs for LINC02154 Gene
Paralogs for LINC02154 Gene
No data available for Paralogs for LINC02154 Gene
Variants for LINC02154 Gene
All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).
Additional Variant Information for LINC02154 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- LINC02154
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02154 Gene
Disorders for LINC02154 Gene
| Disorder | Aliases | PubMed IDs |
|---|---|---|
| esophageal cancer |
|
Search LINC02154 in MalaCards
View complete list of genes associated with diseases
Additional Disease Information for LINC02154
- Atlas
- ATLAS of Genetics and Cytogenetics in Oncology and Haematology
- Open Targets Platform
- Open Targets Platform
No data available for UniProtKB/Swiss-Prot and Genatlas for LINC02154 Gene
Publications for LINC02154 Gene
- Identification of a RNA-Seq Based 8-Long Non-Coding RNA Signature Predicting Survival in Esophageal Cancer. (PMID: 28028307) Fan Q … Liu B (Medical science monitor : international medical journal of experimental and clinical research 2016) 2 3 74
- Identification of intrahepatic cholangiocarcinoma related genes by comparison with normal liver tissues using expressed sequence tags. (PMID: 16712791) Wang AG … Kim NS (Biochemical and biophysical research communications 2006) 3
Products for LINC02154 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
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- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LINC02154
- Origene Custom Protein Services for LINC02154
- Browse OriGene Inhibitory RNA Products For LINC02154
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for LINC02154
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For LINC02154
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
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- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for LINC02154
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for LINC02154
- Search GeneCopoeia for miRNA 3'UTR Target clone products for LINC02154
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for LINC02154
Sources for LINC02154 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM® (Updated: 05-Mar-2021)
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) MedlinePlus Genetics
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNAcentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Open Targets Platform
- (175) 5SRRNADB
- (176) snoDB
- (177) MirGeneDB