Aliases for LINC02154 Gene

Subcategory (RNA class) for LINC02154 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC02154 Gene

  • Long Intergenic Non-Protein Coding RNA 2154 2 3 5
  • LINC02154 2 5 165
  • NONHSAG054038.2 91
  • HSALNG0136701 164
  • GS1-600G8.5 2

External Ids for LINC02154 Gene

Summaries for LINC02154 Gene

GeneCards Summary for LINC02154 Gene

LINC02154 (Long Intergenic Non-Protein Coding RNA 2154) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC02154 include Esophageal Cancer.

Additional gene information for LINC02154 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02154 Gene

Genomics for LINC02154 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02154 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XJ013303 Promoter/Enhancer 0.8 EPDnew Ensembl 609.6 -1.5 -1548 3.6 SOX6 FOSL1 MNT SPI1 POLR2A LINC02154 GS1-600G8.3 ATXN3L lnc-ATXN3L-4 RF00017-8164 FAM9C
GH0XJ013282 Enhancer 1.2 FANTOM5 Ensembl ENCODE 6.5 +17.9 17939 6.6 TEAD4 LEF1 IKZF1 JUND POLR2A DPF2 SOX6 TCF12 EP300 HMBOX1 LINC02154 lnc-EGFL6-12 lnc-TMSB4X-9 ATXN3L lnc-TMSB4X-7 RF00017-8164 FAM9C
GH0XJ013372 Enhancer 0.8 Ensembl ENCODE dbSUPER 5.4 -69.5 -69547 4 JUND NFE2 FOS MAFG ATF2 NFE2L2 EMSY LINC02154 LOC105373137 GPX1P1 LINC01203 ATXN3L EGFL6
GH0XJ013368 Enhancer 0.6 Ensembl dbSUPER 7.6 -65.6 -65648 2.2 FOXA2 GATA3 FOXA1 ATF7 LOC105373137 LINC02154 GPX1P1 LINC01203 ATXN3L EGFL6
GH0XJ013344 Enhancer 0.5 Ensembl 7.1 -41.9 -41948 2.4 RELA RELB GATAD2B IKZF1 NR2F1 MTA2 ZNF687 IKZF2 LINC02154 RF00017-8164 piR-32214-703 LINC01203 ATXN3L EGFL6
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02154 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02154 Gene

Genomic Locations for LINC02154 Gene
chrX:13,266,047-13,303,453
(GRCh38/hg38)
Size:
37,407 bases
Orientation:
Minus strand
chrX:13,284,167-13,321,571
(GRCh37/hg19)
Size:
37,405 bases
Orientation:
Minus strand

Genomic View for LINC02154 Gene

Genes around LINC02154 on UCSC Golden Path with GeneCards custom track
LINC02154 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC02154 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02154 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02154 Gene

Proteins for LINC02154 Gene

Post-translational modifications for LINC02154 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02154 Gene

Domains & Families for LINC02154 Gene

Gene Families for LINC02154 Gene

genes like me logo Genes that share domains with LINC02154: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02154 Gene

Function for LINC02154 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02154 Gene

Localization for LINC02154 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02154 Gene

Pathways & Interactions for LINC02154 Gene

PathCards logo

SuperPathways for LINC02154 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02154 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02154 Gene

Drugs & Compounds for LINC02154 Gene

No Compound Related Data Available

Transcripts for LINC02154 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02154 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000047B8CD_9606 lncRNA 1497 3

Ensembl: ENST00000412485 (view in UCSC) ,

LNCipedia: LINC02154:7,

NONCODE: NONHSAT136291.2,

URS00000AF62D_9606 lncRNA 927 3

Ensembl: ENST00000443965 (view in UCSC) ,

LNCipedia: LINC02154:5,

NONCODE: NONHSAT136293.2,

URS0000BC43DC_9606 lncRNA 1421 2

HGNC: 53015,

RefSeq: NR_146309,

URS0000EF3C1B_9606 lncRNA 1387 1

Ensembl: ENST00000670053 (view in UCSC) ,

URS00008BB0AC_9606 lncRNA 2410 2

LNCipedia: LINC02154:6,

NONCODE: NONHSAT136290.2,

LINC02154 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02154 Gene

4 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02154 Gene

No ASD Table

Relevant External Links for LINC02154 Gene

GeneLoc Exon Structure for
LINC02154

Expression for LINC02154 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02154 Gene

Orthologs for LINC02154 Gene

Evolution for LINC02154 Gene

ENSEMBL:
Gene Tree for LINC02154 (if available)
TreeFam:
Gene Tree for LINC02154 (if available)

No data available for Orthologs for LINC02154 Gene

Paralogs for LINC02154 Gene

No data available for Paralogs for LINC02154 Gene

Variants for LINC02154 Gene

Additional dbSNP identifiers (rs#s) for LINC02154 Gene

Additional Variant Information for LINC02154 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02154

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02154 Gene

Disorders for LINC02154 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LINC02154 Gene - From: LncRNADisease, DISEASES, and GeneCards

Disorder Aliases PubMed IDs
esophageal cancer
  • esophageal cancer, somatic
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with LINC02154: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC02154 Gene

Publications for LINC02154 Gene

  1. Identification of a RNA-Seq Based 8-Long Non-Coding RNA Signature Predicting Survival in Esophageal Cancer. (PMID: 28028307) Fan Q … Liu B (Medical science monitor : international medical journal of experimental and clinical research 2016) 2 3
  2. Identification of intrahepatic cholangiocarcinoma related genes by comparison with normal liver tissues using expressed sequence tags. (PMID: 16712791) Wang AG … Kim NS (Biochemical and biophysical research communications 2006) 3

Products for LINC02154 Gene

Sources for LINC02154 Gene