Aliases for LINC02153 Gene

Subcategory (RNA class) for LINC02153 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for LINC02153 Gene

  • Long Intergenic Non-Protein Coding RNA 2153 2 3 5
  • LINC02153 2 170
  • NONHSAG049689 94
  • HSALNG0063832 169

External Ids for LINC02153 Gene

Summaries for LINC02153 Gene

GeneCards Summary for LINC02153 Gene

LINC02153 (Long Intergenic Non-Protein Coding RNA 2153) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC02153 include Major Depressive Disorder.

Additional gene information for LINC02153 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02153 Gene

Genomics for LINC02153 Gene

GeneHancer (GH) Regulatory Elements for LINC02153 Gene

Promoters and enhancers for LINC02153 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J020972 Enhancer 0.2 Ensembl 750.6 +0.5 480 1 LINC02153 ENSG00000254092 lnc-ATP6V1B2-9
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02153 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02153 Gene

Genomic Locations for LINC02153 Gene
chr8:20,972,021-20,995,120
(GRCh38/hg38)
Size:
23,100 bases
Orientation:
Plus strand
chr8:20,831,308-20,852,630
(GRCh37/hg19)
Size:
21,323 bases
Orientation:
Plus strand

Genomic View for LINC02153 Gene

Genes around LINC02153 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02153 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02153 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02153 Gene

Proteins for LINC02153 Gene

Post-translational modifications for LINC02153 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02153 Gene

Domains & Families for LINC02153 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02153 Gene

Function for LINC02153 Gene

Phenotypes From GWAS Catalog for LINC02153 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02153 Gene

Localization for LINC02153 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02153 Gene

Pathways & Interactions for LINC02153 Gene

PathCards logo

SuperPathways for LINC02153 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02153 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02153 Gene

Drugs & Compounds for LINC02153 Gene

No Compound Related Data Available

Transcripts for LINC02153 Gene

mRNA/cDNA for LINC02153 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(6) Selected AceView cDNA sequences:
(11) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(7) RNACentral transcripts :
(4) LncBook transcripts :
(6) LNCipedia transcripts :
(6) NONCODE transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02153 Gene

No ASD Table

Relevant External Links for LINC02153 Gene

GeneLoc Exon Structure for
LINC02153
ECgene alternative splicing isoforms for
LINC02153

Expression for LINC02153 Gene

No Expression Related Data Available

Primer Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02153 Gene

Orthologs for LINC02153 Gene

Evolution for LINC02153 Gene

ENSEMBL:
Gene Tree for LINC02153 (if available)
TreeFam:
Gene Tree for LINC02153 (if available)

No data available for Orthologs for LINC02153 Gene

Paralogs for LINC02153 Gene

No data available for Paralogs for LINC02153 Gene

Variants for LINC02153 Gene

Sequence variations from dbSNP and Humsavar for LINC02153 Gene

SNP ID Clin Chr 08 pos Variation AA Info Type
rs1000023874 -- 20,987,124(+) T/A intron_variant
rs1000059329 -- 20,988,961(+) C/A/T intron_variant
rs1000076211 -- 20,986,919(+) C/A intron_variant
rs1000109737 -- 20,989,150(+) T/C intron_variant
rs1000191918 -- 20,976,776(+) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC02153 Gene

Variant ID Type Subtype PubMed ID
esv2759604 CNV loss 17122850
nsv1025989 CNV gain 25217958
nsv1028279 CNV loss 25217958
nsv476770 CNV novel sequence insertion 20440878
nsv6108 CNV insertion 18451855
nsv831258 CNV gain 17160897

Additional Variant Information for LINC02153 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02153

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC02153 Gene

Disorders for LINC02153 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LINC02153 Gene - From: LncRNADisease and GeneCards

Disorder Aliases PubMed IDs
major depressive disorder
  • mdd
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC02153

genes like me logo Genes that share disorders with LINC02153: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC02153 Gene

Publications for LINC02153 Gene

  1. Long Non-Coding RNA: Potential Diagnostic and Therapeutic Biomarker for Major Depressive Disorder. (PMID: 28039689) Cui X … Cheng Z (Medical science monitor : international medical journal of experimental and clinical research 2016) 2 3 56

Products for LINC02153 Gene

Sources for LINC02153 Gene