Aliases for LINC02153 Gene

Data sources for LINC02153 Gene:

Subcategory (RNA class) for LINC02153 Gene


Aliases for LINC02153 Gene

External Ids for LINC02153 Gene

Summaries for LINC02153 Gene

GeneCards Summary for LINC02153 Gene

LINC02153 (Long Intergenic Non-Protein Coding RNA 2153) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC02153 include Major Depressive Disorder.

Additional gene information for LINC02153 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02153 Gene

Genomics for LINC02153 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02153 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J020972 Enhancer 0.2 Ensembl 250.7 +0.5 480 1 LINC02153 ENSG00000254092 lnc-ATP6V1B2-9 LZTS1 GFRA2
GH08J021017 Enhancer 0.7 ENCODE 0.3 +45.9 45884 0.2 IRF2 TAL1 FOXA2 ZNF316 NFE2 IRF9 FOXK2 FOXA1 MAFG TAF7 lnc-ATP6V1B2-10 lnc-ATP6V1B2-9 LINC02153 lnc-GFRA2-6 ENSG00000254092 GFRA2 LZTS1
GH08J021040 Enhancer 0.7 ENCODE 0.2 +69.3 69284 0.2 CTCF ZIC2 SIN3A REST VEZF1 ZNF341 SMC3 GABPB1 RAD21 ZNF48 piR-60031-058 ENSG00000254040 LINC02153 lnc-GFRA2-6 ENSG00000254092 GFRA2 LZTS1
GH08J021033 Enhancer 0.6 Ensembl 0.2 +62.1 62080 0.2 ZEB2 FOSL1 EGR1 GLIS1 ARID1B DPF2 SMARCE1 ATF3 EGR2 ZNF24 ENSG00000254040 piR-60031-058 lnc-ATP6V1B2-10 LINC02153 lnc-GFRA2-6 ENSG00000254092 GFRA2 LZTS1
GH08J021013 Enhancer 0.4 Ensembl 0.3 +41.7 41724 0.5 PHB2 RAD21 IKZF1 lnc-ATP6V1B2-10 lnc-ATP6V1B2-9 LINC02153 lnc-GFRA2-6 ENSG00000254092 LZTS1 GFRA2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02153 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02153 Gene

Latest Assembly
88,019 bases
Plus strand

Previous Assembly
(GRCh37/hg19 by Entrez Gene)
21,134 bases
Plus strand

(GRCh37/hg19 by Ensembl)
21,323 bases
Plus strand

Genomic View for LINC02153 Gene

Genes around LINC02153 on UCSC Golden Path with GeneCards custom track
LINC02153 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC02153 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02153 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02153 Gene

Proteins for LINC02153 Gene

Post-translational modifications for LINC02153 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02153 Gene

Domains & Families for LINC02153 Gene

Gene Families for LINC02153 Gene

genes like me logo Genes that share domains with LINC02153: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02153 Gene

Function for LINC02153 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02153 Gene

Localization for LINC02153 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02153 Gene

Pathways & Interactions for LINC02153 Gene

PathCards logo

SuperPathways for LINC02153 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02153 Gene


No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02153 Gene

Drugs & Compounds for LINC02153 Gene

No Compound Related Data Available

Transcripts for LINC02153 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02153 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00005A8B89_9606 lncRNA 1649 5

RefSeq: NR_033894,

Ensembl: ENST00000522604 (view in UCSC) ,

LncBook: HSALNT0133924,

LNCipedia: LINC02153:34,


URS0000619A42_9606 lncRNA 954 3

Ensembl: ENST00000517573 (view in UCSC) ,

LNCipedia: LINC02153:32,


URS0000EF2A44_9606 lncRNA 1852 1

Ensembl: ENST00000656273 (view in UCSC) ,

URS0000EF682C_9606 lncRNA 901 1

Ensembl: ENST00000666963 (view in UCSC) ,

URS0000EF665E_9606 lncRNA 756 1

Ensembl: ENST00000653516 (view in UCSC) ,

LINC02153 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02153 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02153 Gene

No ASD Table

Relevant External Links for LINC02153 Gene

GeneLoc Exon Structure for

Expression for LINC02153 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC02153

No Expression Related Data Available

Primer products for research

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02153 Gene

Orthologs for LINC02153 Gene

Evolution for LINC02153 Gene

Gene Tree for LINC02153 (if available)
Gene Tree for LINC02153 (if available)

No data available for Orthologs for LINC02153 Gene

Paralogs for LINC02153 Gene

No data available for Paralogs for LINC02153 Gene

Variants for LINC02153 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC02153 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LINC02153 Gene

Variant ID Type Subtype PubMed ID
esv2759604 CNV loss 17122850
nsv1025989 CNV gain 25217958
nsv1028279 CNV loss 25217958
nsv476770 CNV novel sequence insertion 20440878
nsv6108 CNV insertion 18451855
nsv831258 CNV gain 17160897

Additional Variant Information for LINC02153 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC02153 Gene

Disorders for LINC02153 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LINC02153 Gene - From: LNC and GCD

Disorder Aliases PubMed IDs
major depressive disorder
  • mdd
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC02153

genes like me logo Genes that share disorders with LINC02153: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC02153 Gene

Publications for LINC02153 Gene

  1. Long Non-Coding RNA: Potential Diagnostic and Therapeutic Biomarker for Major Depressive Disorder. (PMID: 28039689) Cui X … Cheng Z (Medical science monitor : international medical journal of experimental and clinical research 2016) 2 3 74

Products for LINC02153 Gene

Sources for LINC02153 Gene