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Aliases for LINC02152 Gene
Subcategory (RNA class) for LINC02152 Gene
lncRNA
Aliases for LINC02152 Gene
External Ids for LINC02152 Gene
- HGNC: 53014
- NCBI Entrez Gene: 105371071
- Ensembl: ENSG00000261319
Summaries for LINC02152 Gene
GeneCards Summary for LINC02152 Gene
LINC02152 (Long Intergenic Non-Protein Coding RNA 2152) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC02152 include Major Depressive Disorder.
Additional gene information for LINC02152 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02152 Gene
Genomics for LINC02152 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for LINC02152 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH16J008087 | Enhancer | 1 | Ensembl ENCODE | 15.4 | -208.6 | -208633 | 1.6 | IKZF1 IRF2 HES1 BHLHE40 TAF9B FOSL1 HLTF ATF1 SUPT5H SMARCA4 | LINC02152 USP7 lnc-RBFOX1-1 LOC105371070 piR-48209-230 ENSG00000260289 TMEM114 | |
| GH16J008083 | Enhancer | 0.5 | VISTA UCNEbase | 13.3 | -212.8 | -212825 | 1.2 | LINC02152 lnc-RBFOX1-1 piR-48209-230 ENSG00000260289 LOC105371070 TMEM114 | ||
| GH16J008113 | Enhancer | 0.8 | FANTOM5 | 8.1 | -183.2 | -183220 | 0.4 | GTF2E2 VEZF1 TRIM25 ELF1 NUFIP1 RELA FOSL1 IRF9 CUX1 SMARCA4 | ENSG00000260289 HSALNG0109374-001 LOC105371070 piR-43583-195 piR-44276-006 piR-41399-163 piR-50308-222 piR-53562-132 piR-36393-191 piR-55281-220 | |
| GH16J008137 | Enhancer | 0.3 | Ensembl | 7.2 | -158.7 | -158690 | 0.4 | SOX6 RNF2 | HSALNG0109379 LINC02152 piR-31199-124 HSALNG0109374-001 TMEM114 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LINC02152 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for LINC02152 Gene
Latest Assembly
- chr16:8,296,491-8,299,772
- (GRCh38/hg38)
- Size:
- 3,282 bases
- Orientation:
- Plus strand
Previous Assembly
- chr16:8,348,494-8,349,774
- (GRCh37/hg19 by Ensembl)
- Size:
- 1,281 bases
- Orientation:
- Plus strand
Genomic View for LINC02152 Gene
Genes around LINC02152 on UCSC Golden Path with GeneCards custom track
LINC02152 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
- Cytogenetic band:
-
- 16p13.2 by HGNC
- 16p13.2 by Entrez Gene
- 16p13.2 by Ensembl
LINC02152 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LINC02152 Gene
Proteins for LINC02152 Gene
Post-translational modifications for LINC02152 Gene
No Post-translational modifications
No data available for DME Specific Peptides for LINC02152 Gene
Domains & Families for LINC02152 Gene
Gene Families for LINC02152 Gene
No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02152 Gene
Function for LINC02152 Gene
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Cell Lines for research
No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02152 Gene
Localization for LINC02152 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02152 Gene
Transcripts for LINC02152 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02152 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS000024ECAF_9606 | lncRNA | 1281 | 3 |
Ensembl: ENST00000566208 (view in UCSC) , LNCipedia: LINC02152:3, NONCODE: NONHSAT140386.2, |
| URS00009C5F69_9606 | lncRNA | 333 | 2 |
LncBook: HSALNT0227366, NONCODE: NONHSAT172625.1, |
| URS0001BEE1BA_9606 | lncRNA | 5898 | 1 |
LncBook: HSALNT0227361, |
| URS0001BF3AD1_9606 | lncRNA | 3240 | 1 |
LncBook: HSALNT0227345, |
| URS0001BFAA43_9606 | lncRNA | 3130 | 1 |
LncBook: HSALNT0227346, |
LINC02152 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for LINC02152 Gene
- 1 NCBI additional mRNA sequence :
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Relevant External Links for LINC02152 Gene
- GeneLoc Exon Structure for
- LINC02152
Expression for LINC02152 Gene
No Expression Related Data Available
No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02152 Gene
Orthologs for LINC02152 Gene
No data available for Orthologs for LINC02152 Gene
Paralogs for LINC02152 Gene
No data available for Paralogs for LINC02152 Gene
Variants for LINC02152 Gene
All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).
Additional Variant Information for LINC02152 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- LINC02152
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02152 Gene
Disorders for LINC02152 Gene
| Disorder | Aliases | PubMed IDs |
|---|---|---|
| major depressive disorder |
|
Search LINC02152 in MalaCards
View complete list of genes associated with diseases
No data available for UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02152 Gene
Publications for LINC02152 Gene
- Long Non-Coding RNA: Potential Diagnostic and Therapeutic Biomarker for Major Depressive Disorder. (PMID: 28039689) Cui X … Cheng Z (Medical science monitor : international medical journal of experimental and clinical research 2016) 2 3 74
Products for LINC02152 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LINC02152
- Origene Custom Protein Services for LINC02152
- Browse OriGene Inhibitory RNA Products For LINC02152
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for LINC02152
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For LINC02152
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for LINC02152
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for LINC02152
- Search GeneCopoeia for miRNA 3'UTR Target clone products for LINC02152
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for LINC02152
Sources for LINC02152 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM® (Updated: 05-Mar-2021)
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) MedlinePlus Genetics
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNAcentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Open Targets Platform
- (175) 5SRRNADB
- (176) snoDB
- (177) MirGeneDB