Aliases for LINC02152 Gene

Data sources for LINC02152 Gene:

Subcategory (RNA class) for LINC02152 Gene

lncRNA

Aliases for LINC02152 Gene

External Ids for LINC02152 Gene

Summaries for LINC02152 Gene

GeneCards Summary for LINC02152 Gene

LINC02152 (Long Intergenic Non-Protein Coding RNA 2152) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC02152 include Major Depressive Disorder.

Additional gene information for LINC02152 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02152 Gene

Genomics for LINC02152 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02152 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J008087 Enhancer 1 Ensembl ENCODE 15.4 -208.6 -208633 1.6 IKZF1 IRF2 HES1 BHLHE40 TAF9B FOSL1 HLTF ATF1 SUPT5H SMARCA4 LINC02152 USP7 lnc-RBFOX1-1 LOC105371070 piR-48209-230 ENSG00000260289 TMEM114
GH16J008083 Enhancer 0.5 VISTA UCNEbase 13.3 -212.8 -212825 1.2 LINC02152 lnc-RBFOX1-1 piR-48209-230 ENSG00000260289 LOC105371070 TMEM114
GH16J008113 Enhancer 0.8 FANTOM5 8.1 -183.2 -183220 0.4 GTF2E2 VEZF1 TRIM25 ELF1 NUFIP1 RELA FOSL1 IRF9 CUX1 SMARCA4 ENSG00000260289 HSALNG0109374-001 LOC105371070 piR-43583-195 piR-44276-006 piR-41399-163 piR-50308-222 piR-53562-132 piR-36393-191 piR-55281-220
GH16J008137 Enhancer 0.3 Ensembl 7.2 -158.7 -158690 0.4 SOX6 RNF2 HSALNG0109379 LINC02152 piR-31199-124 HSALNG0109374-001 TMEM114
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02152 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02152 Gene

Latest Assembly
chr16:8,296,491-8,299,772
(GRCh38/hg38)
Size:
3,282 bases
Orientation:
Plus strand

Previous Assembly
chr16:8,348,494-8,349,774
(GRCh37/hg19 by Ensembl)
Size:
1,281 bases
Orientation:
Plus strand

Genomic View for LINC02152 Gene

Genes around LINC02152 on UCSC Golden Path with GeneCards custom track
LINC02152 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC02152 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02152 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02152 Gene

Proteins for LINC02152 Gene

Post-translational modifications for LINC02152 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02152 Gene

Domains & Families for LINC02152 Gene

Gene Families for LINC02152 Gene

genes like me logo Genes that share domains with LINC02152: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02152 Gene

Function for LINC02152 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02152 Gene

Localization for LINC02152 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02152 Gene

Pathways & Interactions for LINC02152 Gene

PathCards logo

SuperPathways for LINC02152 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02152 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02152 Gene

Drugs & Compounds for LINC02152 Gene

No Compound Related Data Available

Transcripts for LINC02152 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02152 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000024ECAF_9606 lncRNA 1281 3

Ensembl: ENST00000566208 (view in UCSC) ,

LNCipedia: LINC02152:3,

NONCODE: NONHSAT140386.2,

URS00009C5F69_9606 lncRNA 333 2

LncBook: HSALNT0227366,

NONCODE: NONHSAT172625.1,

URS0001BEE1BA_9606 lncRNA 5898 1

LncBook: HSALNT0227361,

URS0001BF3AD1_9606 lncRNA 3240 1

LncBook: HSALNT0227345,

URS0001BFAA43_9606 lncRNA 3130 1

LncBook: HSALNT0227346,

LINC02152 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02152 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02152 Gene

No ASD Table

Relevant External Links for LINC02152 Gene

GeneLoc Exon Structure for
LINC02152

Expression for LINC02152 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02152 Gene

Orthologs for LINC02152 Gene

Evolution for LINC02152 Gene

ENSEMBL:
Gene Tree for LINC02152 (if available)
TreeFam:
Gene Tree for LINC02152 (if available)

No data available for Orthologs for LINC02152 Gene

Paralogs for LINC02152 Gene

No data available for Paralogs for LINC02152 Gene

Variants for LINC02152 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC02152 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for LINC02152 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02152

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02152 Gene

Disorders for LINC02152 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LINC02152 Gene - From: LNC and GCD

Disorder Aliases PubMed IDs
major depressive disorder
  • mdd
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with LINC02152: view

No data available for UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02152 Gene

Publications for LINC02152 Gene

  1. Long Non-Coding RNA: Potential Diagnostic and Therapeutic Biomarker for Major Depressive Disorder. (PMID: 28039689) Cui X … Cheng Z (Medical science monitor : international medical journal of experimental and clinical research 2016) 2 3 74

Products for LINC02152 Gene

Sources for LINC02152 Gene