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Aliases for LINC02151 Gene
Data sources for LINC02151 Gene:
RNA type for LINC02151 Gene
lncRNA
Aliases for LINC02151 Gene
- Long Intergenic Non-Protein Coding RNA 2151 (HGNC, NCBI Entrez Gene, Ensembl)
- TCONS_00019174 (HGNC, NCBI Entrez Gene)
- LINC02151 (Ensembl, LNCipedia)
- NONHSAG009698.2 (NONCODE)
- HSALNG0087394 (LncBook)
External Ids for LINC02151 Gene
- HGNC: 53013
- NCBI Entrez Gene: 109729162
- Ensembl: ENSG00000236437
Summaries for LINC02151 Gene
GeneCards Summary for LINC02151 Gene
LINC02151 (Long Intergenic Non-Protein Coding RNA 2151) is an RNA Gene, and is affiliated with the lncRNA class.
Additional gene information for LINC02151 Gene
- Alliance of Genome Resources
- Search for LINC02151 at DataMed
- Search for LINC02151 at HumanCyc
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02151 Gene
Genomics for LINC02151 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for LINC02151 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH11J116501 | Promoter/Enhancer | 0.7 | Ensembl ENCODE | 250.7 | -0.3 | -277 | 0.6 | EZH2 CHD2 | LINC02151 HSALNG0087395 lnc-CADM1-3 BUD13 CADM1 | |
| GH11J116499 | Enhancer | 0.5 | ENCODE | 250.7 | +1.1 | 1081 | 0.2 | ZNF654 REST CTCF SMC3 RAD21 MIER2 ZNF143 | LINC02151 LOC107987166 lnc-CADM1-3 BUD13 CADM1 | |
| GH11J116504 | Enhancer | 0.4 | Ensembl | 0.7 | -5.0 | -4971 | 2.4 | EGR2 CHD2 ZFHX2 | LINC02151 HSALNG0087395 lnc-CADM1-3 BUD13 | |
| GH11J116533 | Enhancer | 0.6 | Ensembl ENCODE | 0.3 | -33.3 | -33270 | 1.4 | YY1 EZH2 RAD21 SMC3 CTCF | HSALNG0087395 LINC02151 lnc-CADM1-3 BUD13 | |
| GH11J116481 | Enhancer | 0.3 | Ensembl | 0.4 | +19.2 | 19229 | 0.4 | ZNF16 | RNF214 BUD13 ZPR1 LOC107987166 LINC02151 lnc-CADM1-3 CADM1 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LINC02151 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for LINC02151 Gene
Latest Assembly
- chr11:116,496,898-116,500,630
- (GRCh38/hg38)
- Size:
- 3,733 bases
- Orientation:
- Minus strand
Previous Assembly
- chr11:116,367,616-116,371,347
- (GRCh37/hg19 by Ensembl)
- Size:
- 3,732 bases
- Orientation:
- Minus strand
Genomic View for LINC02151 Gene
Genes around LINC02151 on UCSC Golden Path with GeneCards custom track
LINC02151 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
- Cytogenetic band:
-
- 11q23.3 by HGNC
- 11q23.3 by Entrez Gene
- 11q23.3 by Ensembl
LINC02151 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
No data available for RefSeq DNA sequence for LINC02151 Gene
Proteins for LINC02151 Gene
Post-translational modifications for LINC02151 Gene
No Post-translational modifications
No data available for DME Specific Peptides for LINC02151 Gene
Domains & Families for LINC02151 Gene
Gene Families for LINC02151 Gene
No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02151 Gene
Function for LINC02151 Gene
Phenotypes From GWAS Catalog for LINC02151 Gene
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Cell Lines for research
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02151 Gene
Localization for LINC02151 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02151 Gene
Transcripts for LINC02151 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02151 Gene
| RNAcentral Transcript ID | RNA Type | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS00000F008D_9606 | lncRNA | 921 | 4 |
Ensembl: ENST00000452629 (view in UCSC) , LncBook: HSALNT0181656, LNCipedia: LINC02151:3, NONCODE: NONHSAT024348.2, |
| URS0001BD4CBD_9606 | lncRNA | 921 | 1 |
LncBook: HSALNT0181656, |
LINC02151 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for LINC02151 Gene
- 1 NCBI additional mRNA sequence :
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Relevant External Links for LINC02151 Gene
- GeneLoc Exon Structure for
- LINC02151
Expression for LINC02151 Gene
No Expression Related Data Available
No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02151 Gene
Orthologs for LINC02151 Gene
Evolution for LINC02151 Gene
- ENSEMBL:
- Gene Tree for LINC02151 (if available)
- TreeFam:
- Gene Tree for LINC02151 (if available)
- Alliance of Genome Resources:
- Additional Orthologs for LINC02151
No data available for Orthologs for LINC02151 Gene
Paralogs for LINC02151 Gene
No data available for Paralogs for LINC02151 Gene
Variants for LINC02151 Gene
Additional Variant Information for LINC02151 Gene
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02151 Gene
Disorders for LINC02151 Gene
No disorders were found for LINC02151 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02151 Gene
Publications for LINC02151 Gene
- Long Non-Coding RNA: Potential Diagnostic and Therapeutic Biomarker for Major Depressive Disorder. (PMID: 28039689) Cui X … Cheng Z (Medical science monitor : international medical journal of experimental and clinical research 2016) 2 3
- Therapeutic role of long non-coding RNA TCONS_00019174 in depressive disorders is dependent on Wnt/β-catenin signaling pathway. (PMID: 29036835) Ni X … Wu Z (Journal of integrative neuroscience 2018) 3
Products for LINC02151 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LINC02151
- Origene Custom Protein Services for LINC02151
- Browse OriGene Inhibitory RNA Products For LINC02151
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for LINC02151
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For LINC02151
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for LINC02151
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for LINC02151
- Search GeneCopoeia for miRNA 3'UTR Target clone products for LINC02151
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for LINC02151
Sources for LINC02151 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM® (Updated: 05-Apr-2021)
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) ASD
- (27) SAGE
- (28) SOURCE
- (29) HomoloGene
- (30) PanEnsembl
- (31) euGenes
- (32) SGD
- (33) FlyBase
- (34) WormBase
- (35) Pseudogene
- (36) DGV
- (37) dbSNP
- (38) GenAtlas
- (39) HGMD
- (40) GAD
- (41) BGMUT
- (42) HuGE
- (43) Atlas
- (44) GenBank
- (45) HORDE
- (46) HUGE
- (47) IMGT
- (48) Leiden
- (49) miRBase
- (50) DME
- (51) OriGene
- (52) PubMed
- (53) R&D Systems
- (54) Tocris
- (55) Abcam
- (56) Novus Biologicals
- (57) ProSpec
- (58) Sino Biological
- (59) GenScript
- (60) Qiagen
- (61) OCA
- (62) Proteopedia
- (63) MOPED
- (64) neXtProt
- (65) Reactome
- (66) GeneGo (Thomson Reuters)
- (67) DISEASES
- (68) SIMAP
- (69) GenomeRNAi
- (70) LifeMap
- (71) miRTarBase
- (72) MalaCards
- (73) Invitrogen
- (74) BitterDB
- (75) ESI-BIO
- (76) RefSeq
- (77) BioSystems
- (78) MaxQB
- (79) IUPHAR
- (80) BioGPS
- (81) Illumina
- (82) COMPARTMENTS
- (83) HOMER
- (84) PaxDb
- (85) ApexBio
- (86) Addgene
- (87) antibodies-online
- (88) CYP
- (89) NONCODE
- (90) TreeFam
- (91) PathCards
- (92) GeneReviews
- (93) GeneTex
- (94) Taconic Biosciences
- (95) GTEx
- (96) ProteomicsDB
- (97) SCBT
- (98) DGIdb
- (99) ClinicalTrials
- (100) RVIS
- (101) SIGNOR
- (102) diseasecard
- (103) NIH Rare Diseases
- (104) Orphanet
- (105) UMLS
- (106) GTR
- (107) Disease Ontology
- (108) MedlinePlus Genetics
- (109) MeSH
- (110) MedlinePlus
- (111) CDC
- (112) NINDS
- (113) NCBI Bookshelf
- (114) ClinVar
- (115) Gene Damage Index
- (116) HPO
- (117) UDN
- (118) VISTA
- (119) FANTOM5
- (120) ENCODE
- (121) ProSci
- (122) Horizon
- (123) The Signaling Pathways Project (SPP)
- (124) IID
- (125) VectorBuilder
- (126) SNPedia
- (127) BRCA Exchange
- (128) CIViC
- (129) ProteoGenix
- (130) dbSUPER
- (131) TISSUES
- (132) Gene ORGANizer
- (133) abm
- (134) Human Protein Atlas
- (135) GWAS Catalog
- (136) Monarch Initiative
- (137) DataMed
- (138) HumanCyc
- (139) UCNEbase
- (140) EPDnew
- (141) Applied Biosystems
- (142) GlyConnect
- (143) Aminode
- (144) GeneCopoeia
- (145) GPS-Prot
- (146) RNAcentral
- (147) LncRNADisease
- (148) LOVD
- (149) miR2Disease
- (150) DiseaseEnhancer
- (151) Boster Bio
- (152) Biorbyt
- (153) Biocompare
- (154) Mastermind
- (155) CTD^2 Dashboard
- (156) CraniofacialAtlas
- (157) GeneImprint
- (158) Synthego
- (159) ENA
- (160) GtRNAdb
- (161) LncBase
- (162) LncBook
- (163) LNCipedia
- (164) Modomics
- (165) PDBe
- (166) Rfam
- (167) SILVA
- (168) snOPY
- (169) SRPDB
- (170) GENCODE
- (171) TarBase
- (172) Open Targets Platform
- (173) 5SRRNADB
- (174) snoDB
- (175) MirGeneDB
- (176) Alliance of Genome Resources