LINC02151 Gene (RNA Gene)

Long Intergenic Non-Protein Coding RNA 2151

GC11M116497
GIFtS:
7
See more...

Aliases for LINC02151 Gene

Subcategory (RNA class) for LINC02151 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC02151 Gene

  • Long Intergenic Non-Protein Coding RNA 2151 2 3 5
  • LINC02151 2 5 165
  • TCONS_00019174 2 3
  • NONHSAG009698.2 91
  • HSALNG0087394 164

External Ids for LINC02151 Gene

Summaries for LINC02151 Gene

GeneCards Summary for LINC02151 Gene

LINC02151 (Long Intergenic Non-Protein Coding RNA 2151) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02151 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02151 Gene

Genomics for LINC02151 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for LINC02151 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH11J116501 Promoter/Enhancer 0.7 Ensembl ENCODE 600.7 -0.4 -377 0.4 EZH2 CHD2 LINC02151 ENSG00000278945 BUD13 CADM1
GH11J116499 Enhancer 0.5 ENCODE 600.7 +1.1 1081 0.2 CTCF REST RAD21 SMC3 ZNF654 ZNF143 SMARCA4 MIER2 LINC02151 LOC107987166 BUD13 CADM1
GH11J116502 Promoter 0.3 Ensembl 600.7 -0.9 -871 0.2 LINC02151 ENSG00000278945 BUD13 CADM1
GH11J116533 Enhancer 0.6 Ensembl ENCODE 0.3 -33.2 -33171 1.6 CTCF RAD21 YY1 EZH2 TBP LINC02151 ENSG00000278945 BUD13
GH11J116562 Enhancer 0.9 Ensembl ENCODE 0.2 -62.7 -62714 1.5 HNRNPL GATAD2A TFE3 FOXA1 TCF7 EGR1 NFE2 TGIF2 FOXA2 TEAD1 ENSG00000278945 LINC02151 BUD13
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02151 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02151 Gene

Genomic Locations for LINC02151 Gene
chr11:116,496,899-116,500,630
(GRCh38/hg38)
Size:
3,732 bases
Orientation:
Minus strand
chr11:116,367,616-116,371,347
(GRCh37/hg19)
Size:
3,732 bases
Orientation:
Minus strand

Genomic View for LINC02151 Gene

Genes around LINC02151 on UCSC Golden Path with GeneCards custom track
LINC02151 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC02151 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02151 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

No data available for RefSeq DNA sequence for LINC02151 Gene

Proteins for LINC02151 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LINC02151 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02151 Gene

Domains & Families for LINC02151 Gene

Gene Families for LINC02151 Gene

HGNC:
genes like me logo Genes that share domains with LINC02151: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02151 Gene

Function for LINC02151 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LINC02151 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02151 Gene

Localization for LINC02151 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02151 Gene

Pathways & Interactions for LINC02151 Gene

PathCards logo

SuperPathways for LINC02151 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02151 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02151 Gene

Drugs & Compounds for LINC02151 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LINC02151 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02151 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00000F008D_9606 lncRNA 921 5

HGNC: 53013,

Ensembl: ENST00000452629 (view in UCSC) ,

LncBook: HSALNT0181656,

LNCipedia: LINC02151:3,

NONCODE: NONHSAT024348.2,

LINC02151 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02151 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02151 Gene

No ASD Table

Relevant External Links for LINC02151 Gene

GeneLoc Exon Structure for
LINC02151

Expression for LINC02151 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02151 Gene

Orthologs for LINC02151 Gene

Evolution for LINC02151 Gene

ENSEMBL:
Gene Tree for LINC02151 (if available)
TreeFam:
Gene Tree for LINC02151 (if available)

No data available for Orthologs for LINC02151 Gene

Paralogs for LINC02151 Gene

No data available for Paralogs for LINC02151 Gene

Variants for LINC02151 Gene

Additional Variant Information for LINC02151 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02151

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02151 Gene

Disorders for LINC02151 Gene

No disorders were found for LINC02151 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02151 Gene

Publications for LINC02151 Gene

  1. Long Non-Coding RNA: Potential Diagnostic and Therapeutic Biomarker for Major Depressive Disorder. (PMID: 28039689) Cui X … Cheng Z (Medical science monitor : international medical journal of experimental and clinical research 2016) 2 3
  2. Therapeutic role of long non-coding RNA TCONS_00019174 in depressive disorders is dependent on Wnt/β-catenin signaling pathway. (PMID: 29036835) Ni X … Wu Z (Journal of integrative neuroscience 2018) 3

ExternalLinks

View latest publications for LINC02151 gene in Mastermind

Products for LINC02151 Gene

Sources for LINC02151 Gene