Aliases for LINC02143 Gene

Subcategory (RNA class) for LINC02143 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC02143 Gene

  • Long Intergenic Non-Protein Coding RNA 2143 2 3 5
  • LINC02143 2 5 165
  • NONHSAG042146.2 91
  • HSALNG0046352 164
  • CTD-2313P7.1 3

External Ids for LINC02143 Gene

Summaries for LINC02143 Gene

GeneCards Summary for LINC02143 Gene

LINC02143 (Long Intergenic Non-Protein Coding RNA 2143) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02143 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02143 Gene

Genomics for LINC02143 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02143 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J164498 Enhancer 0.6 Ensembl ENCODE 5.3 -28.1 -28117 3.4 POLR2A MAFK NANOG POU5F1 ENSG00000241956 LINC02143 RPS15P6 LOC102546299 LOC105377703 MAT2B
GH05J164503 Enhancer 0.7 Ensembl 0.3 -34.3 -34316 0.2 CTCF FOXA1 PHF21A PKNOX1 REST RAD21 TRIM22 ZNF444 SMC3 GATA3 LINC02143 RPS15P6 ENSG00000241956 LOC102546299 LOC105377703
GH05J164514 Enhancer 0.2 Ensembl 0.3 -45.3 -45317 1 ENSG00000241956 LINC02143 RPS15P6 LOC102546299 LOC105377703
GH05J164518 Enhancer 0.2 Ensembl 0.3 -48.7 -48717 0.2 LINC02143 RPS15P6 ENSG00000241956 LOC102546299 LOC105377703
GH05J164532 Enhancer 0.2 Ensembl 0.2 -62.8 -62817 1.2 ENSG00000241956 LINC02143 RPS15P6 LOC102546299 LOC105377703
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02143 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02143 Gene

Genomic Locations for LINC02143 Gene
chr5:164,448,161-164,470,184
(GRCh38/hg38)
Size:
22,024 bases
Orientation:
Minus strand
chr5:163,875,428-163,894,408
(GRCh37/hg19)
Size:
18,981 bases
Orientation:
Minus strand

Genomic View for LINC02143 Gene

Genes around LINC02143 on UCSC Golden Path with GeneCards custom track
LINC02143 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC02143 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02143 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02143 Gene

Proteins for LINC02143 Gene

Post-translational modifications for LINC02143 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02143 Gene

Domains & Families for LINC02143 Gene

Gene Families for LINC02143 Gene

genes like me logo Genes that share domains with LINC02143: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02143 Gene

Function for LINC02143 Gene

Phenotypes From GWAS Catalog for LINC02143 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02143 Gene

Localization for LINC02143 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02143 Gene

Pathways & Interactions for LINC02143 Gene

PathCards logo

SuperPathways for LINC02143 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02143 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02143 Gene

Drugs & Compounds for LINC02143 Gene

No Compound Related Data Available

Transcripts for LINC02143 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02143 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00003BD32C_9606 lncRNA 520 3

HGNC: 53003,

RefSeq: NR_105064,

LNCipedia: LINC02143:9,

URS0000EF0DDC_9606 lncRNA 1258 1

Ensembl: ENST00000519929 (view in UCSC) ,

URS00008BE6A4_9606 lncRNA 982 3

LncBook: HSALNT0097198,

LNCipedia: LINC02143:7,

NONCODE: NONHSAT104934.2,

URS00008BCAA9_9606 lncRNA 506 3

LncBook: HSALNT0097200,

LNCipedia: LINC02143:8,

NONCODE: NONHSAT104935.2,

URS00009C5E2F_9606 lncRNA 1256 2

LncBook: HSALNT0097196,

NONCODE: NONHSAT204955.1,

LINC02143 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02143 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02143 Gene

No ASD Table

Relevant External Links for LINC02143 Gene

GeneLoc Exon Structure for
LINC02143

Expression for LINC02143 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC02143

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02143 Gene

Orthologs for LINC02143 Gene

Evolution for LINC02143 Gene

ENSEMBL:
Gene Tree for LINC02143 (if available)
TreeFam:
Gene Tree for LINC02143 (if available)

No data available for Orthologs for LINC02143 Gene

Paralogs for LINC02143 Gene

No data available for Paralogs for LINC02143 Gene

Variants for LINC02143 Gene

Additional dbSNP identifiers (rs#s) for LINC02143 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC02143 Gene

Variant ID Type Subtype PubMed ID
esv2760959 CNV gain+loss 21179565
esv3607476 CNV gain 21293372
nsv462508 CNV loss 19166990
nsv600228 CNV loss 21841781

Additional Variant Information for LINC02143 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02143

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC02143 Gene

Disorders for LINC02143 Gene

Additional Disease Information for LINC02143

No disorders were found for LINC02143 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02143 Gene

Publications for LINC02143 Gene

  1. A genome-wide association study of breast and prostate cancer in the NHLBI's Framingham Heart Study. (PMID: 17903305) Murabito JM … Hwang SJ (BMC medical genetics 2007) 3

No data available for Mastermind for LINC02143 Gene

Products for LINC02143 Gene

Sources for LINC02143 Gene