LINC02139 Gene (RNA Gene)

Long Intergenic Non-Protein Coding RNA 2139

GC16P085138
GIFtS:
10
See more...

Aliases for LINC02139 Gene

Subcategory (RNA class) for LINC02139 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC02139 Gene

  • Long Intergenic Non-Protein Coding RNA 2139 2 3 5
  • LINC02139 2 5 165
  • NONHSAG020182.2 91
  • HSALNG0113191 164

External Ids for LINC02139 Gene

Summaries for LINC02139 Gene

GeneCards Summary for LINC02139 Gene

LINC02139 (Long Intergenic Non-Protein Coding RNA 2139) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02139 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02139 Gene

Genomics for LINC02139 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data

GeneHancers around LINC02139 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02139 Gene

Genomic Locations for LINC02139 Gene
chr16:85,137,098-85,151,641
(GRCh38/hg38)
Size:
14,544 bases
Orientation:
Plus strand
chr16:85,170,756-85,183,049
(GRCh37/hg19)
Size:
12,294 bases
Orientation:
Plus strand

Genomic View for LINC02139 Gene

Genes around LINC02139 on UCSC Golden Path with GeneCards custom track
LINC02139 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC02139 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02139 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LINC02139 Gene

Proteins for LINC02139 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LINC02139 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02139 Gene

Domains & Families for LINC02139 Gene

Gene Families for LINC02139 Gene

HGNC:
genes like me logo Genes that share domains with LINC02139: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02139 Gene

Function for LINC02139 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LINC02139 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02139 Gene

Localization for LINC02139 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02139 Gene

Pathways & Interactions for LINC02139 Gene

PathCards logo

SuperPathways for LINC02139 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02139 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02139 Gene

Drugs & Compounds for LINC02139 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LINC02139 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02139 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000077004A_9606 lncRNA 2005 4

Ensembl: ENST00000612023 (view in UCSC) ,

LncBook: HSALNT0234599,

LNCipedia: LINC02139:9,

NONCODE: NONHSAT144106.2,

URS000075B254_9606 lncRNA 2005 2

HGNC: 52999,

RefSeq: NR_033984,

URS00008BC2D9_9606 lncRNA 481 3

LncBook: HSALNT0234601,

LNCipedia: LINC02139:11,

NONCODE: NONHSAT144111.2,

URS00008BB9D8_9606 lncRNA 5279 2

LNCipedia: LINC02139:10,

NONCODE: NONHSAT144107.2,

URS0000D58BEA_9606 lncRNA 1997 1

LNCipedia: LINC02139:7,

LINC02139 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02139 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02139 Gene

No ASD Table

Relevant External Links for LINC02139 Gene

GeneLoc Exon Structure for
LINC02139

Expression for LINC02139 Gene

Products:

  1. Primer

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC02139

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02139 Gene

Orthologs for LINC02139 Gene

Evolution for LINC02139 Gene

ENSEMBL:
Gene Tree for LINC02139 (if available)
TreeFam:
Gene Tree for LINC02139 (if available)

No data available for Orthologs for LINC02139 Gene

Paralogs for LINC02139 Gene

No data available for Paralogs for LINC02139 Gene

Variants for LINC02139 Gene

Additional dbSNP identifiers (rs#s) for LINC02139 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC02139 Gene

Variant ID Type Subtype PubMed ID
dgv3059n100 CNV gain 25217958
esv275398 CNV loss 21479260
nsv1066002 CNV loss 25217958
nsv1066260 CNV gain 25217958
nsv478061 CNV novel sequence insertion 20440878
nsv483044 CNV gain 15286789

Additional Variant Information for LINC02139 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02139

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC02139 Gene

Disorders for LINC02139 Gene

Additional Disease Information for LINC02139

ATLAS of Genetics and Cytogenetics in Oncology and Haematology
Open Targets Platform

No disorders were found for LINC02139 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02139 Gene

Publications for LINC02139 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for LINC02139 Gene

Products for LINC02139 Gene

Sources for LINC02139 Gene