LINC02138 Gene (RNA Gene)

Long Intergenic Non-Protein Coding RNA 2138

GC16P089167
GIFtS:
9
See more...

Aliases for LINC02138 Gene

Subcategory (RNA class) for LINC02138 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for LINC02138 Gene

  • Long Intergenic Non-Protein Coding RNA 2138 2 3 5
  • LINC02138 2 5 165
  • NONHSAG020325.2 91

External Ids for LINC02138 Gene

Summaries for LINC02138 Gene

GeneCards Summary for LINC02138 Gene

LINC02138 (Long Intergenic Non-Protein Coding RNA 2138) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02138 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02138 Gene

Genomics for LINC02138 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for LINC02138 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH16J089166 Enhancer 1.2 ENCODE CraniofacialAtlas 600.7 +1.1 1085 1.4 SP1 HNRNPL GATAD2A CTCF ZBTB33 TEAD4 PRDM10 ZNF629 TFE3 IKZF1 LINC02138 ACSF3 LOC105371414 CDH15
GH16J089093 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 12 -68.1 -68065 11.4 SP1 HNRNPL SIX5 ZNF692 BACH1 JUND FOXA1 LARP7 DDX20 ZNF143 ACSF3 CDK10 CBFA2T3 LOC100129697 LINC02138 CDH15 PABPN1L ENSG00000259877 GAS8 SLC22A31
GH16J089200 Promoter/Enhancer 1.7 EPDnew Ensembl ENCODE dbSUPER 12.8 +35.1 35117 2.6 HNRNPL GATAD2A ZBTB33 NFKBIZ ZIC2 RBFOX2 RXRB NR2C1 IRF2 EZH2 SLC22A31 ZNF778 lnc-SLC22A31-6 CDH15 LINC02138 CBFA2T3 ACSF3 TUBB3 ENSG00000259877
GH16J089104 Enhancer 0.9 ENCODE dbSUPER 12 -61.0 -61026 0.9 RELA ZIC2 DPF2 RELB RUNX3 CTBP1 TCF12 KLF4 ZNF217 BCL11A ACSF3 LINC02138 CDH15 ENSG00000261546 piR-58082
GH16J089105 Enhancer 0.8 ENCODE dbSUPER 12 -60.5 -60475 0.2 CTBP1 KLF4 PKNOX1 ZNF217 MBD2 SIN3A IKZF1 KLF9 DPF2 CTCF LINC02138 CDH15 ENSG00000261546 piR-58082 ACSF3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02138 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02138 Gene

Genomic Locations for LINC02138 Gene
chr16:89,166,383-89,169,147
(GRCh38/hg38)
Size:
2,765 bases
Orientation:
Plus strand
chr16:89,232,791-89,235,555
(GRCh37/hg19)
Size:
2,765 bases
Orientation:
Plus strand

Genomic View for LINC02138 Gene

Genes around LINC02138 on UCSC Golden Path with GeneCards custom track
LINC02138 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC02138 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02138 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LINC02138 Gene

Proteins for LINC02138 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LINC02138 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02138 Gene

Domains & Families for LINC02138 Gene

Gene Families for LINC02138 Gene

HGNC:
genes like me logo Genes that share domains with LINC02138: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02138 Gene

Function for LINC02138 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LINC02138 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02138 Gene

Localization for LINC02138 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02138 Gene

Pathways & Interactions for LINC02138 Gene

PathCards logo

SuperPathways for LINC02138 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02138 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02138 Gene

Drugs & Compounds for LINC02138 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LINC02138 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02138 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000157B8A_9606 lncRNA 1326 5

HGNC: 52998,

RefSeq: NR_046200,

Ensembl: ENST00000378340 (view in UCSC) ,

LNCipedia: LINC02138:3,

NONCODE: NONHSAT144476.2,

LINC02138 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02138 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02138 Gene

No ASD Table

Relevant External Links for LINC02138 Gene

GeneLoc Exon Structure for
LINC02138

Expression for LINC02138 Gene

Products:

  1. Primer

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC02138

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02138 Gene

Orthologs for LINC02138 Gene

Evolution for LINC02138 Gene

ENSEMBL:
Gene Tree for LINC02138 (if available)
TreeFam:
Gene Tree for LINC02138 (if available)

No data available for Orthologs for LINC02138 Gene

Paralogs for LINC02138 Gene

No data available for Paralogs for LINC02138 Gene

Variants for LINC02138 Gene

Additional dbSNP identifiers (rs#s) for LINC02138 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC02138 Gene

Variant ID Type Subtype PubMed ID
dgv3066n100 CNV gain 25217958
dgv5320n54 CNV loss 21841781
esv2715123 CNV deletion 23290073
nsv1062378 CNV gain 25217958
nsv1063024 CNV gain 25217958
nsv457620 CNV gain 19166990
nsv457621 CNV loss 19166990
nsv471115 CNV loss 18288195
nsv482951 CNV loss 15286789
nsv509638 CNV insertion 20534489
nsv519104 CNV loss 19592680
nsv521217 CNV loss 19592680
nsv524478 CNV loss 19592680
nsv573674 CNV gain 21841781
nsv573720 CNV gain 21841781
nsv573723 CNV gain 21841781
nsv573724 CNV loss 21841781
nsv952072 CNV deletion 24416366

Additional Variant Information for LINC02138 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02138

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC02138 Gene

Disorders for LINC02138 Gene

Additional Disease Information for LINC02138

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for LINC02138 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02138 Gene

Publications for LINC02138 Gene

No publications were found for LINC02138 Gene.

No data available for Mastermind for LINC02138 Gene

Products for LINC02138 Gene

Sources for LINC02138 Gene