Aliases for LINC02136 Gene

Subcategory (RNA class) for LINC02136 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC02136 Gene

  • Long Intergenic Non-Protein Coding RNA 2136 2 3 5
  • LINC02136 2 5 165
  • NONHSAG019883.2 91
  • HSALNG0112480 164
  • HSALNG0112475 164

External Ids for LINC02136 Gene

Summaries for LINC02136 Gene

GeneCards Summary for LINC02136 Gene

LINC02136 (Long Intergenic Non-Protein Coding RNA 2136) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02136 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02136 Gene

Genomics for LINC02136 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02136 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J071425 Promoter/Enhancer 1.4 Ensembl ENCODE 600.7 0.0 -37 1.8 HNRNPL GATAD2A TEAD4 PRDM10 ZNF629 TFE3 SOX13 IKZF1 NFKBIZ KDM1A LINC02136 TRM-CAT2-1 ZNF23 ZNF19 DHX38 SF3B3 ENSG00000247324 PHLPP2 ATXN1L IST1
GH16J071413 Enhancer 0.8 ENCODE 0.4 +13.6 13551 0.2 GATAD2A CTCF IKZF1 REST RAD21 TRIM22 BRCA1 EGR1 SMC3 MYC ENSG00000247324 ZNF23 CALB2 ZNF19 ENSG00000262120 lnc-CALB2-5 LINC02136 LOC105371332 TLE7
GH16J071412 Enhancer 0.6 ENCODE 0.4 +14.0 14021 0.2 CTCF RUNX3 ZNF157 ZNF580 ZNF777 RAD21 NFIB ZNF654 DMAP1 GLIS1 ZNF23 ZNF19 ENSG00000262120 lnc-CALB2-5 LINC02136 LOC105371332 TLE7 CALB2
GH16J071367 Enhancer 0.9 FANTOM5 ENCODE 0.2 +59.1 59057 0.4 CTCF RFX1 ZNF692 ZNF143 REST GTF2F1 SOX6 TARDBP CTBP1 BMI1 CALB2 LOC105371332 LINC02136 TLE7
GH16J071387 Enhancer 0.7 Ensembl ENCODE 0.3 +39.7 39663 2.8 USF1 POLR2A ZNF384 TEAD4 SP1 ZNF148 CBFA2T3 CALB2 ZNF19 HPR ENSG00000260593 CHST4 LOC105371332 LINC02136 TLE7
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02136 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02136 Gene

Genomic Locations for LINC02136 Gene
chr16:71,366,933-71,426,464
(GRCh38/hg38)
Size:
59,532 bases
Orientation:
Minus strand
chr16:71,444,343-71,460,367
(GRCh37/hg19)
Size:
16,025 bases
Orientation:
Minus strand

Genomic View for LINC02136 Gene

Genes around LINC02136 on UCSC Golden Path with GeneCards custom track
LINC02136 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC02136 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02136 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02136 Gene

Proteins for LINC02136 Gene

Post-translational modifications for LINC02136 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02136 Gene

Domains & Families for LINC02136 Gene

Gene Families for LINC02136 Gene

genes like me logo Genes that share domains with LINC02136: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02136 Gene

Function for LINC02136 Gene

Phenotypes From GWAS Catalog for LINC02136 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02136 Gene

Localization for LINC02136 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02136 Gene

Pathways & Interactions for LINC02136 Gene

PathCards logo

SuperPathways for LINC02136 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02136 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02136 Gene

Drugs & Compounds for LINC02136 Gene

No Compound Related Data Available

Transcripts for LINC02136 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02136 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000BC43FC_9606 lncRNA 529 2

HGNC: 52995,

RefSeq: NR_146574,

URS0000EF0BB8_9606 lncRNA 1211 1

Ensembl: ENST00000567469 (view in UCSC) ,

URS0000024C1B_9606 lncRNA 530 3

LncBook: HSALNT0233074,

LNCipedia: LINC02136:4,

NONCODE: NONHSAT143471.2,

URS00008BD89A_9606 lncRNA 217 3

LncBook: HSALNT0233075,

LNCipedia: LINC02136:5,

NONCODE: NONHSAT143472.2,

URS00009AE98B_9606 lncRNA 243 2

LncBook: HSALNT0233076,

NONCODE: NONHSAT174017.1,

LINC02136 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02136 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02136 Gene

No ASD Table

Relevant External Links for LINC02136 Gene

GeneLoc Exon Structure for
LINC02136

Expression for LINC02136 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02136 Gene

Orthologs for LINC02136 Gene

Evolution for LINC02136 Gene

ENSEMBL:
Gene Tree for LINC02136 (if available)
TreeFam:
Gene Tree for LINC02136 (if available)

No data available for Orthologs for LINC02136 Gene

Paralogs for LINC02136 Gene

No data available for Paralogs for LINC02136 Gene

Variants for LINC02136 Gene

Additional dbSNP identifiers (rs#s) for LINC02136 Gene

Additional Variant Information for LINC02136 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02136

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02136 Gene

Disorders for LINC02136 Gene

Additional Disease Information for LINC02136

No disorders were found for LINC02136 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02136 Gene

Publications for LINC02136 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3

No data available for Mastermind for LINC02136 Gene

Products for LINC02136 Gene

Sources for LINC02136 Gene