Aliases for LINC02130 Gene

Subcategory (RNA class) for LINC02130 Gene

lncRNA

Number of RNA Genes sources:

1 / 17

Aliases for LINC02130 Gene

  • Long Intergenic Non-Protein Coding RNA 2130 2 3 5
  • LINC02130 2 5 165

External Ids for LINC02130 Gene

Summaries for LINC02130 Gene

GeneCards Summary for LINC02130 Gene

LINC02130 (Long Intergenic Non-Protein Coding RNA 2130) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC02130 include Breast Cancer.

Additional gene information for LINC02130 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02130 Gene

Genomics for LINC02130 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02130 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J014369 Promoter/Enhancer 1.3 EPDnew Ensembl ENCODE 600.7 0.0 -19 1.9 CREB1 ZBTB33 TARDBP ZHX2 ZNF740 GTF2F1 ATF7 SMARCA5 ESR1 ZKSCAN1 LINC02130 MG828538 lnc-PARN-10 PARN MRTFB
GH16J014372 Enhancer 0.9 Ensembl ENCODE 0.7 -3.0 -3046 2.6 KDM1A RCOR2 ZIC2 PKNOX1 PBX2 KLF4 ZNF217 SMARCB1 CUX1 ZFHX2 MG828538 LOC100505915 LINC02130 lnc-PARN-10 PARN MRTFB
GH16J014362 Enhancer 1.1 Ensembl ENCODE 0.4 +6.0 5965 3.4 HNRNPL CREB1 GATAD2A ZBTB33 ATF7 TFE3 SOX13 NFKBIZ RCOR2 TARDBP piR-50437-237 PARN BFAR PDXDC1 NOMO1 NPIPP1 LINC02130 lnc-PARN-9 lnc-PARN-10 MRTFB
GH16J014366 Enhancer 0.2 Ensembl 0.7 +3.7 3665 0.4 L13714-168 piR-50437-237 LINC02130 lnc-PARN-10 PARN MRTFB
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02130 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02130 Gene

Genomic Locations for LINC02130 Gene
chr16:14,363,109-14,370,266
(GRCh38/hg38)
Size:
7,158 bases
Orientation:
Minus strand
chr16:14,456,966-14,464,123
(GRCh37/hg19)
Size:
7,158 bases
Orientation:
Minus strand

Genomic View for LINC02130 Gene

Genes around LINC02130 on UCSC Golden Path with GeneCards custom track
LINC02130 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC02130 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02130 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02130 Gene

Proteins for LINC02130 Gene

Post-translational modifications for LINC02130 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02130 Gene

Domains & Families for LINC02130 Gene

Gene Families for LINC02130 Gene

genes like me logo Genes that share domains with LINC02130: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02130 Gene

Function for LINC02130 Gene

Phenotypes From GWAS Catalog for LINC02130 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02130 Gene

Localization for LINC02130 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02130 Gene

Pathways & Interactions for LINC02130 Gene

PathCards logo

SuperPathways for LINC02130 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02130 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02130 Gene

Drugs & Compounds for LINC02130 Gene

No Compound Related Data Available

Transcripts for LINC02130 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02130 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00002AC633_9606 lncRNA 518 4

HGNC: 52989,

RefSeq: NR_131191,

Ensembl: ENST00000566054 (view in UCSC) ,

LNCipedia: LINC02130:3,

LINC02130 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02130 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02130 Gene

No ASD Table

Relevant External Links for LINC02130 Gene

GeneLoc Exon Structure for
LINC02130

Expression for LINC02130 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02130 Gene

Orthologs for LINC02130 Gene

Evolution for LINC02130 Gene

ENSEMBL:
Gene Tree for LINC02130 (if available)
TreeFam:
Gene Tree for LINC02130 (if available)

No data available for Orthologs for LINC02130 Gene

Paralogs for LINC02130 Gene

No data available for Paralogs for LINC02130 Gene

Variants for LINC02130 Gene

Additional dbSNP identifiers (rs#s) for LINC02130 Gene

Additional Variant Information for LINC02130 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02130

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02130 Gene

Disorders for LINC02130 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LINC02130 Gene - From: LncRNADisease

Disorder Aliases PubMed IDs
breast cancer
  • breast lobular carcinoma
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with LINC02130: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC02130 Gene

Publications for LINC02130 Gene

No publications were found for LINC02130 Gene.

Products for LINC02130 Gene

Sources for LINC02130 Gene