Aliases for LINC02130 Gene

Subcategory (RNA class) for LINC02130 Gene

lncRNA

Number of RNA Genes sources:

1 / 14

Aliases for LINC02130 Gene

  • Long Intergenic Non-Protein Coding RNA 2130 2 3 5
  • LINC02130 2 168

External Ids for LINC02130 Gene

Summaries for LINC02130 Gene

GeneCards Summary for LINC02130 Gene

LINC02130 (Long Intergenic Non-Protein Coding RNA 2130) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC02130 include Breast Cancer.

Additional gene information for LINC02130 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02130 Gene

Genomics for LINC02130 Gene

GeneHancer (GH) Regulatory Elements for LINC02130 Gene

Promoters and enhancers for LINC02130 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J014369 Enhancer 1 Ensembl ENCODE 500.7 0.0 -19 1.9 ZNF217 CLOCK KLF4 ZNF740 GATAD2B CTBP1 SIN3A ESRRA MYC ELK1 LINC02130 MG828538 lnc-PARN-10
GH16J014372 Enhancer 0.9 Ensembl ENCODE 0.7 -3.0 -3046 2.6 ZNF217 NCOR1 ZIC2 KLF4 CUX1 HDAC2 POLR2A ZFHX2 BCOR SMARCB1 MG828538 LOC100505915 LINC02130 lnc-PARN-10
GH16J014362 Enhancer 1.1 Ensembl ENCODE 0.4 +6.0 5965 3.4 EP300 FOXK2 ZNF217 TCF12 POLR2G NCOR1 FOS KDM6A CLOCK TCF7 piR-50437-237 PARN BFAR PDXDC1 NOMO1 NPIPP1 LINC02130 lnc-PARN-9 lnc-PARN-10
GH16J014366 Enhancer 0.2 Ensembl 0.7 +3.7 3665 0.4 L13714-170 piR-50437-237 LINC02130 lnc-PARN-10
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02130 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02130 Gene

Genomic Locations for LINC02130 Gene
chr16:14,363,109-14,370,266
(GRCh38/hg38)
Size:
7,158 bases
Orientation:
Minus strand
chr16:14,456,966-14,464,123
(GRCh37/hg19)
Size:
7,158 bases
Orientation:
Minus strand

Genomic View for LINC02130 Gene

Genes around LINC02130 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02130 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02130 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02130 Gene

Proteins for LINC02130 Gene

Post-translational modifications for LINC02130 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02130 Gene

Domains & Families for LINC02130 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02130 Gene

Function for LINC02130 Gene

Phenotypes From GWAS Catalog for LINC02130 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02130 Gene

Localization for LINC02130 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02130 Gene

Pathways & Interactions for LINC02130 Gene

PathCards logo

SuperPathways for LINC02130 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC02130 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02130 Gene

Drugs & Compounds for LINC02130 Gene

No Compound Related Data Available

Transcripts for LINC02130 Gene

mRNA/cDNA for LINC02130 Gene

1 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
1 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02130 Gene

No ASD Table

Relevant External Links for LINC02130 Gene

GeneLoc Exon Structure for
LINC02130

Expression for LINC02130 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02130 Gene

Orthologs for LINC02130 Gene

Evolution for LINC02130 Gene

ENSEMBL:
Gene Tree for LINC02130 (if available)
TreeFam:
Gene Tree for LINC02130 (if available)

No data available for Orthologs for LINC02130 Gene

Paralogs for LINC02130 Gene

No data available for Paralogs for LINC02130 Gene

Variants for LINC02130 Gene

Additional dbSNP identifiers (rs#s) for LINC02130 Gene

Additional Variant Information for LINC02130 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02130

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02130 Gene

Disorders for LINC02130 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LINC02130 Gene - From: LncRNADisease

Disorder Aliases PubMed IDs
breast cancer
  • breast cancer, familial
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC02130

genes like me logo Genes that share disorders with LINC02130: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC02130 Gene

Publications for LINC02130 Gene

No publications were found for LINC02130 Gene.

Products for LINC02130 Gene

Sources for LINC02130 Gene