Aliases for LINC02126 Gene

Subcategory (RNA class) for LINC02126 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC02126 Gene

  • Long Intergenic Non-Protein Coding RNA 2126 2 3 5
  • LINC02126 2 168
  • NONHSAG019665 92
  • HSALNG0112042 167

External Ids for LINC02126 Gene

Summaries for LINC02126 Gene

GeneCards Summary for LINC02126 Gene

LINC02126 (Long Intergenic Non-Protein Coding RNA 2126) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02126 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02126 Gene

Genomics for LINC02126 Gene

GeneHancer (GH) Regulatory Elements for LINC02126 Gene

Promoters and enhancers for LINC02126 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J065176 Enhancer 0.5 Ensembl ENCODE 509.1 -0.1 -125 1.1 NR2F2 MAFK LINC02126 CDH11 piR-32559-176
GH16J065117 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 7.4 +55.4 55447 7.8 EP300 CTCF TEAD4 REST RAD21 TRIM22 SMC3 MXI1 YY1 ZNF335 CDH11 LINC02126 LOC105371314 lnc-CDH11-12 lnc-CDH5-4 lnc-TK2-11
GH16J065105 Enhancer 0.3 Ensembl 6.5 +71.2 71162 0.4 SMARCA4 LINC02126 lnc-TK2-11 CDH11 lnc-CDH11-12 ENSG00000278893
GH16J065125 Promoter/Enhancer 1 EPDnew Ensembl ENCODE dbSUPER 0.2 +50.6 50577 0.8 POLR2A CEBPB CDH11 lnc-CDH11-12 LOC105371314 lnc-CDH5-4 LINC02126
GH16J065180 Enhancer 0.3 ENCODE 0.7 -4.6 -4634 1.5 CTCF RAD21 CDH11 LINC02126 piR-32559-176
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02126 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02126 Gene

Genomic Locations for LINC02126 Gene
chr16:65,141,360-65,176,762
(GRCh38/hg38)
Size:
35,403 bases
Orientation:
Minus strand
chr16:65,175,659-65,210,616
(GRCh37/hg19)
Size:
34,958 bases
Orientation:
Minus strand

Genomic View for LINC02126 Gene

Genes around LINC02126 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02126 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02126 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02126 Gene

Proteins for LINC02126 Gene

Post-translational modifications for LINC02126 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02126 Gene

Domains & Families for LINC02126 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02126 Gene

Function for LINC02126 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02126 Gene

Localization for LINC02126 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02126 Gene

Pathways & Interactions for LINC02126 Gene

PathCards logo

SuperPathways for LINC02126 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC02126 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02126 Gene

Drugs & Compounds for LINC02126 Gene

No Compound Related Data Available

Transcripts for LINC02126 Gene

mRNA/cDNA for LINC02126 Gene

9 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
4 NONCODE transcripts :
4 LncBook transcripts :
5 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02126 Gene

No ASD Table

Relevant External Links for LINC02126 Gene

GeneLoc Exon Structure for
LINC02126

Expression for LINC02126 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC02126

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02126 Gene

Orthologs for LINC02126 Gene

Evolution for LINC02126 Gene

ENSEMBL:
Gene Tree for LINC02126 (if available)
TreeFam:
Gene Tree for LINC02126 (if available)

No data available for Orthologs for LINC02126 Gene

Paralogs for LINC02126 Gene

No data available for Paralogs for LINC02126 Gene

Variants for LINC02126 Gene

Additional dbSNP identifiers (rs#s) for LINC02126 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC02126 Gene

Variant ID Type Subtype PubMed ID
esv34131 CNV loss 18971310
esv3638845 CNV loss 21293372
nsv475194 CNV novel sequence insertion 20440878
nsv509625 CNV insertion 20534489
nsv522506 CNV loss 19592680
nsv833260 CNV loss 17160897

Additional Variant Information for LINC02126 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02126

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC02126 Gene

Disorders for LINC02126 Gene

Additional Disease Information for LINC02126

No disorders were found for LINC02126 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02126 Gene

Publications for LINC02126 Gene

No publications were found for LINC02126 Gene.

No data available for Mastermind for LINC02126 Gene

Products for LINC02126 Gene

Sources for LINC02126 Gene