Aliases for LINC02122 Gene

Subcategory (RNA class) for LINC02122 Gene

lncRNA

Quality Score for this RNA gene is

14

Aliases for LINC02122 Gene

  • Long Intergenic Non-Protein Coding RNA 2122 2 3 5
  • LINC02122 2 170
  • HSALNG0042670 169
  • NONHSAG040717 94

External Ids for LINC02122 Gene

Summaries for LINC02122 Gene

GeneCards Summary for LINC02122 Gene

LINC02122 (Long Intergenic Non-Protein Coding RNA 2122) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02122 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02122 Gene

Genomics for LINC02122 Gene

GeneHancer (GH) Regulatory Elements for LINC02122 Gene

Promoters and enhancers for LINC02122 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J074098 Enhancer 0.5 Ensembl ENCODE 5.1 +139.2 139178 1.8 POLR2A ZNF707 LINC02122 lnc-ARHGEF28-2 LOC105379035
GH05J074093 Enhancer 0.4 Ensembl ENCODE 5.6 +144.4 144411 0.9 MNT LINC02122 lnc-ARHGEF28-2 LOC105379035
GH05J074085 Enhancer 0.5 Ensembl ENCODE 4.7 +152.5 152544 1.3 ZIC2 GATA3 LINC02122 lnc-ARHGEF28-2 LOC105379035
GH05J074127 Enhancer 0.4 CraniofacialAtlas 4.8 +110.8 110807 1 POLR2A CTCF TEAD1 JUN LINC02122 lnc-ARHGEF28-2 piR-48222-285 LINC01331
GH05J074240 Enhancer 1 Ensembl ENCODE dbSUPER 0.6 -2.5 -2517 6.8 ZNF217 MYC MAX MNT BCL6B HDGF CREB1 CTBP1 HES1 ZNF592 UTP15 LINC02122 lnc-HEXB-4 LINC01332 LINC01331
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02122 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02122 Gene

Genomic Locations for LINC02122 Gene
chr5:74,034,266-74,238,283
(GRCh38/hg38)
Size:
204,018 bases
Orientation:
Minus strand
chr5:73,379,893-73,399,041
(GRCh37/hg19)
Size:
19,149 bases
Orientation:
Minus strand

Genomic View for LINC02122 Gene

Genes around LINC02122 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02122 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02122 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02122 Gene

Proteins for LINC02122 Gene

Post-translational modifications for LINC02122 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02122 Gene

Domains & Families for LINC02122 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02122 Gene

Function for LINC02122 Gene

Phenotypes From GWAS Catalog for LINC02122 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02122 Gene

Localization for LINC02122 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02122 Gene

Pathways & Interactions for LINC02122 Gene

PathCards logo

SuperPathways for LINC02122 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02122 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02122 Gene

Drugs & Compounds for LINC02122 Gene

No Compound Related Data Available

Transcripts for LINC02122 Gene

mRNA/cDNA for LINC02122 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(3) RNACentral transcripts :
(3) LncBook transcripts :
(2) NONCODE transcripts :
(1) LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02122 Gene

No ASD Table

Relevant External Links for LINC02122 Gene

GeneLoc Exon Structure for
LINC02122
ECgene alternative splicing isoforms for
LINC02122

Expression for LINC02122 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02122 Gene

Orthologs for LINC02122 Gene

Evolution for LINC02122 Gene

ENSEMBL:
Gene Tree for LINC02122 (if available)
TreeFam:
Gene Tree for LINC02122 (if available)

No data available for Orthologs for LINC02122 Gene

Paralogs for LINC02122 Gene

No data available for Paralogs for LINC02122 Gene

Variants for LINC02122 Gene

Sequence variations from dbSNP and Humsavar for LINC02122 Gene

SNP ID Clin Chr 05 pos Variation AA Info Type
rs1000010264 -- 74,062,402(-) G/A intron_variant
rs1000052116 -- 74,100,356(-) G/A intron_variant
rs1000064800 -- 74,044,051(-) C/T intron_variant
rs1000121674 -- 74,087,554(-) T/C intron_variant
rs1000122036 -- 74,056,537(-) C/T intron_variant

Additional Variant Information for LINC02122 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02122

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02122 Gene

Disorders for LINC02122 Gene

No disorders were found for LINC02122 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02122 Gene

Publications for LINC02122 Gene

No publications were found for LINC02122 Gene.

No data available for External Links for LINC02122 Gene

Products for LINC02122 Gene

Sources for LINC02122 Gene