Aliases for LINC02117 Gene

Subcategory (RNA class) for LINC02117 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC02117 Gene

  • Long Intergenic Non-Protein Coding RNA 2117 2 3 5
  • LINC02117 2 5 165
  • NONHSAG040213.2 91
  • HSALNG0041259 164

External Ids for LINC02117 Gene

Summaries for LINC02117 Gene

GeneCards Summary for LINC02117 Gene

LINC02117 (Long Intergenic Non-Protein Coding RNA 2117) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02117 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02117 Gene

Genomics for LINC02117 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02117 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J037914 Enhancer 0.3 Ensembl 0.4 +6.2 6223 0.4 RUNX3 LINC02117 lnc-WDR70-6 GDNF GDNF-AS1 EGFLAM
GH05J037941 Enhancer 0.3 ENCODE 0.4 -20.3 -20260 0.9 MAFK FOS GDNF-AS1 ENSG00000250032 LINC02117 GDNF EGFLAM
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02117 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02117 Gene

Genomic Locations for LINC02117 Gene
chr5:37,899,362-37,921,224
(GRCh38/hg38)
Size:
21,863 bases
Orientation:
Minus strand
chr5:37,899,465-37,920,971
(GRCh37/hg19)
Size:
21,507 bases
Orientation:
Minus strand

Genomic View for LINC02117 Gene

Genes around LINC02117 on UCSC Golden Path with GeneCards custom track
LINC02117 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC02117 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02117 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02117 Gene

Proteins for LINC02117 Gene

Post-translational modifications for LINC02117 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02117 Gene

Domains & Families for LINC02117 Gene

Gene Families for LINC02117 Gene

genes like me logo Genes that share domains with LINC02117: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02117 Gene

Function for LINC02117 Gene

Phenotypes From GWAS Catalog for LINC02117 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02117 Gene

Localization for LINC02117 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02117 Gene

Pathways & Interactions for LINC02117 Gene

PathCards logo

SuperPathways for LINC02117 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02117 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02117 Gene

Drugs & Compounds for LINC02117 Gene

No Compound Related Data Available

Transcripts for LINC02117 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02117 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000039DE55_9606 lncRNA 540 5

HGNC: 52972,

Ensembl: ENST00000513673 (view in UCSC) ,

LncBook: HSALNT0086737,

LNCipedia: LINC02117:4,

NONCODE: NONHSAT101074.2,

URS00008B5A1A_9606 lncRNA 758 3

LncBook: HSALNT0086739,

LNCipedia: LINC02117:5,

NONCODE: NONHSAT101075.2,

URS00009B9CE7_9606 lncRNA 544 2

LncBook: HSALNT0086736,

NONCODE: NONHSAT204071.1,

LINC02117 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02117 Gene

No ASD Table

Relevant External Links for LINC02117 Gene

GeneLoc Exon Structure for
LINC02117

No data available for mRNA/cDNA for LINC02117 Gene

Expression for LINC02117 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02117 Gene

Orthologs for LINC02117 Gene

Evolution for LINC02117 Gene

ENSEMBL:
Gene Tree for LINC02117 (if available)
TreeFam:
Gene Tree for LINC02117 (if available)

No data available for Orthologs for LINC02117 Gene

Paralogs for LINC02117 Gene

No data available for Paralogs for LINC02117 Gene

Variants for LINC02117 Gene

Additional dbSNP identifiers (rs#s) for LINC02117 Gene

Additional Variant Information for LINC02117 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02117

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02117 Gene

Disorders for LINC02117 Gene

No disorders were found for LINC02117 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02117 Gene

Publications for LINC02117 Gene

No publications were found for LINC02117 Gene.

No data available for Mastermind for LINC02117 Gene

Products for LINC02117 Gene

Sources for LINC02117 Gene