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Aliases for LINC02112 Gene

Subcategory (RNA class) for LINC02112 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC02112 Gene

  • Long Intergenic Non-Protein Coding RNA 2112 2 3 5
  • CTD-2143L24.1 3

External Ids for LINC02112 Gene

Summaries for LINC02112 Gene

GeneCards Summary for LINC02112 Gene

LINC02112 (Long Intergenic Non-Protein Coding RNA 2112) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC02112 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC02112 Gene

Genomics for LINC02112 Gene

GeneHancer (GH) Regulatory Elements for LINC02112 Gene

Promoters and enhancers for LINC02112 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J009903 Enhancer 0.3 ENCODE 650.7 -0.2 -171 1.1 POLR2A LINC02112 GC05M009935
GH05J009924 Enhancer 0.7 Ensembl ENCODE 0.3 -20.9 -20851 1.2 MAX JUNB FOSL2 FOS CEBPG BATF MYC GC05M009935 LINC02112
GH05J009888 Enhancer 0.5 FANTOM5 ENCODE 0.4 +15.1 15105 0.3 FOS TAS2R1 GC05P009896 LINC02112 GC05M009872 LINC02221
GH05J009928 Enhancer 0.5 ENCODE 0.3 -23.4 -23438 0.2 ZNF316 MAFF MAFG EMSY MAFK GC05M009935 LINC02112
GH05J009869 Enhancer 0.5 ENCODE 0.3 +34.0 34013 0.9 NFE2 EBF1 FOS MEF2B GC05M009872 LINC02221 LINC02112
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02112 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02112 Gene

Genomic Locations for LINC02112 Gene
chr5:9,641,305-9,903,826
(GRCh38/hg38)
Size:
262,522 bases
Orientation:
Minus strand
chr5:9,641,417-9,903,938
(GRCh37/hg19)
Size:
262,522 bases
Orientation:
Minus strand

Genomic View for LINC02112 Gene

Genes around LINC02112 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02112 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02112 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02112 Gene

Proteins for LINC02112 Gene

Post-translational modifications for LINC02112 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02112 Gene

Domains & Families for LINC02112 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC02112 Gene

Function for LINC02112 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02112 Gene

Localization for LINC02112 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02112 Gene

Pathways & Interactions for LINC02112 Gene

SuperPathways for LINC02112 Gene

No Data Available

Interacting Proteins for LINC02112 Gene

Gene Ontology (GO) - Biological Process for LINC02112 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02112 Gene

Drugs & Compounds for LINC02112 Gene

No Compound Related Data Available

Transcripts for LINC02112 Gene

mRNA/cDNA for LINC02112 Gene

(4) Selected AceView cDNA sequences:
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(6) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02112 Gene

No ASD Table

Relevant External Links for LINC02112 Gene

GeneLoc Exon Structure for
LINC02112
ECgene alternative splicing isoforms for
LINC02112

Expression for LINC02112 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02112 Gene

Orthologs for LINC02112 Gene

Evolution for LINC02112 Gene

ENSEMBL:
Gene Tree for LINC02112 (if available)
TreeFam:
Gene Tree for LINC02112 (if available)

No data available for Orthologs for LINC02112 Gene

Paralogs for LINC02112 Gene

No data available for Paralogs for LINC02112 Gene

Variants for LINC02112 Gene

Sequence variations from dbSNP and Humsavar for LINC02112 Gene

SNP ID Clin Chr 05 pos Variation AA Info Type
rs1000003141 -- 9,794,546(-) A/C intron_variant
rs1000007705 -- 9,757,216(-) C/G intron_variant
rs1000022981 -- 9,745,716(-) A/T intron_variant
rs1000049984 -- 9,661,099(-) G/A intron_variant
rs1000054853 -- 9,892,188(-) C/A intron_variant

Additional Variant Information for LINC02112 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02112

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02112 Gene

Disorders for LINC02112 Gene

Additional Disease Information for LINC02112

No disorders were found for LINC02112 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02112 Gene

Publications for LINC02112 Gene

  1. Genome-wide association study of HLA-DQB1*06:02 negative essential hypersomnia. (PMID: 23646285) Khor SS … Tokunaga K (PeerJ 2013) 3 58
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for LINC02112 Gene

Sources for LINC02112 Gene

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