Aliases for LINC02109 Gene

Subcategory (RNA class) for LINC02109 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC02109 Gene

  • Long Intergenic Non-Protein Coding RNA 2109 2 3 5
  • LINC02109 2 168
  • CTD-2118P12.1 3
  • HSALNG0040861 167
  • NONHSAG040100 92
  • Lnc-CDH6-10 168

External Ids for LINC02109 Gene

Additional External Ids for LINC02109 Gene

Previous GeneCards Identifiers for LINC02109 Gene

  • GC05P029145

Summaries for LINC02109 Gene

GeneCards Summary for LINC02109 Gene

LINC02109 (Long Intergenic Non-Protein Coding RNA 2109) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02109 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02109 Gene

Genomics for LINC02109 Gene

GeneHancer (GH) Regulatory Elements for LINC02109 Gene

Promoters and enhancers for LINC02109 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J028913 Enhancer 0.4 Ensembl 0.1 +105.0 104970 0.6 EP300 CEBPG ATF4 POLR2A lnc-CDH6-14 lnc-CDH6-15 LINC02109
GH05J029208 Enhancer 0.6 Ensembl 0 +398.9 398870 0.4 FOS CEBPB CHD2 JUN SPI1 JUND MAX EP300 RAD21 RFX5 piR-45012-396 lnc-CDH6-9 LINC02109
GH05J029150 Enhancer 0.6 Ensembl ENCODE 0 +341.4 341370 1.4 TEAD4 SIX5 NR2C1 ZNF143 LOC105374699 lnc-CDH9-15 LINC02109
GH05J029114 Enhancer 0.6 ENCODE 0.1 +305.3 305258 0.2 REST NFIC SMARCC1 SMARCC2 NCOR1 TAL1 TCF12 POLR2A TEAD4 CBFA2T2 lnc-CDH6-11 piR-50852-123 piR-39098-198 LOC105374699 LINC02109
GH05J029077 Enhancer 0.5 Ensembl 0.1 +268.6 268570 0.2 SMARCC1 SMARCC2 JUN JUND EP300 HLF ENSG00000252601 lnc-CDH6-12 ENSG00000248687 LOC105374699 LINC02109
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02109 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02109 Gene

Genomic Locations for LINC02109 Gene
chr5:28,809,331-29,220,761
(GRCh38/hg38)
Size:
411,431 bases
Orientation:
Plus strand

Genomic View for LINC02109 Gene

Genes around LINC02109 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02109 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02109 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02109 Gene

Proteins for LINC02109 Gene

Post-translational modifications for LINC02109 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02109 Gene

Domains & Families for LINC02109 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02109 Gene

Function for LINC02109 Gene

Phenotypes From GWAS Catalog for LINC02109 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02109 Gene

Localization for LINC02109 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02109 Gene

Pathways & Interactions for LINC02109 Gene

PathCards logo

SuperPathways for LINC02109 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC02109 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02109 Gene

Drugs & Compounds for LINC02109 Gene

No Compound Related Data Available

Transcripts for LINC02109 Gene

mRNA/cDNA for LINC02109 Gene

49 RNACentral transcripts :
1 REFSEQ mRNAs :
5 NCBI additional mRNA sequence :
19 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
33 NONCODE transcripts :
25 LncBook transcripts :
29 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02109 Gene

No ASD Table

Relevant External Links for LINC02109 Gene

GeneLoc Exon Structure for
LINC02109

Expression for LINC02109 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC02109

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02109 Gene

Orthologs for LINC02109 Gene

Evolution for LINC02109 Gene

ENSEMBL:
Gene Tree for LINC02109 (if available)
TreeFam:
Gene Tree for LINC02109 (if available)

No data available for Orthologs for LINC02109 Gene

Paralogs for LINC02109 Gene

No data available for Paralogs for LINC02109 Gene

Variants for LINC02109 Gene

Additional dbSNP identifiers (rs#s) for LINC02109 Gene

Additional Variant Information for LINC02109 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02109

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02109 Gene

Disorders for LINC02109 Gene

Additional Disease Information for LINC02109

No disorders were found for LINC02109 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02109 Gene

Publications for LINC02109 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 54

No data available for Mastermind for LINC02109 Gene

Products for LINC02109 Gene

Sources for LINC02109 Gene