Aliases for LINC02107 Gene

Subcategory (RNA class) for LINC02107 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC02107 Gene

  • Long Intergenic Non-Protein Coding RNA 2107 2 3
  • LINC02119 5 165
  • LINC02107 2 165
  • Long Intergenic Non-Protein Coding RNA 2119 5
  • NONHSAG040218.2 91
  • NONHSAG040217.2 91
  • CTD-2116N24.1 3
  • HSALNG0041264 164

External Ids for LINC02107 Gene

Summaries for LINC02107 Gene

GeneCards Summary for LINC02107 Gene

LINC02107 (Long Intergenic Non-Protein Coding RNA 2107) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02107 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02107 Gene

Genomics for LINC02107 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02107 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J038059 Enhancer 0.8 Ensembl ENCODE 0.3 +34.9 34872 1.3 GATAD2A SOX13 TCF7 FOXA2 TEAD1 SAP130 FOSL2 HOMEZ TEAD3 HMG20A GDNF-AS1 LOC105374730 LINC02107 LINC02119 EGFLAM GDNF
GH05J038069 Enhancer 0.7 ENCODE 0.3 +44.1 44107 0.9 GATAD2A TFE3 RCOR2 RXRB TCF12 SOX13 ETS1 TCF7 ZKSCAN8 FOXA2 GDNF-AS1 LOC105374730 LINC02107 LINC02119 EGFLAM GDNF
GH05J038148 Promoter/Enhancer 1.2 EPDnew dbSUPER 0.1 +122.9 122904 0.1 HNRNPL GATAD2A SOX13 NFKBIZ RCOR2 RBFOX2 RXRB IRF2 CEBPA TAF1 LINC02119 piR-61580-510 piR-36588-345 EGFLAM LINC02107 GDNF
GH05J038104 Enhancer 0.8 ENCODE 0.2 +79.6 79612 2.2 HNRNPL GATAD2A TEAD4 RBFOX2 RXRB SOX13 TGIF2 FOXA2 CHD2 EP300 RF00017-4587 piR-32023-187 LINC02107 LINC02119 EGFLAM GDNF
GH05J037991 Enhancer 0.4 Ensembl 0.3 -33.8 -33767 0.4 NR2F6 XRCC5 EZH2 ZNF644 piR-48772-021 LINC02107 LINC02119 GDNF EGFLAM
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02107 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02107 Gene

Genomic Locations for LINC02107 Gene
chr5:38,025,568-38,184,717
(GRCh38/hg38)
Size:
159,150 bases
Orientation:
Plus strand

Genomic View for LINC02107 Gene

Genes around LINC02107 on UCSC Golden Path with GeneCards custom track
LINC02107 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC02107 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02107 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02107 Gene

Proteins for LINC02107 Gene

Post-translational modifications for LINC02107 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02107 Gene

Domains & Families for LINC02107 Gene

Gene Families for LINC02107 Gene

genes like me logo Genes that share domains with LINC02107: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02107 Gene

Function for LINC02107 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02107 Gene

Localization for LINC02107 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02107 Gene

Pathways & Interactions for LINC02107 Gene

PathCards logo

SuperPathways for LINC02107 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02107 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02107 Gene

Drugs & Compounds for LINC02107 Gene

No Compound Related Data Available

Transcripts for LINC02107 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02107 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000351810_9606 lncRNA 2573 3

Ensembl: ENST00000508853 (view in UCSC) ,

LNCipedia: LINC02119:3,

NONCODE: NONHSAT101083.2,

URS0000BC463B_9606 lncRNA 462 2

HGNC: 52962,

RefSeq: NR_147009,

URS0000E61390_9606 lncRNA 1900 1

Ensembl: ENST00000652286 (view in UCSC) ,

URS0000EF0D5E_9606 lncRNA 1689 1

Ensembl: ENST00000671526 (view in UCSC) ,

URS0000EF57FB_9606 lncRNA 1423 1

Ensembl: ENST00000669275 (view in UCSC) ,

LINC02107 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02107 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02107 Gene

No ASD Table

Relevant External Links for LINC02107 Gene

GeneLoc Exon Structure for
LINC02107

Expression for LINC02107 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC02107

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02107 Gene

Orthologs for LINC02107 Gene

Evolution for LINC02107 Gene

ENSEMBL:
Gene Tree for LINC02107 (if available)
TreeFam:
Gene Tree for LINC02107 (if available)

No data available for Orthologs for LINC02107 Gene

Paralogs for LINC02107 Gene

No data available for Paralogs for LINC02107 Gene

Variants for LINC02107 Gene

Additional dbSNP identifiers (rs#s) for LINC02107 Gene

Additional Variant Information for LINC02107 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02107

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02107 Gene

Disorders for LINC02107 Gene

Additional Disease Information for LINC02107

No disorders were found for LINC02107 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02107 Gene

Publications for LINC02107 Gene

No publications were found for LINC02107 Gene.

Products for LINC02107 Gene

Sources for LINC02107 Gene