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Aliases for LINC02099 Gene

Subcategory (RNA class) for LINC02099 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC02099 Gene

  • Long Intergenic Non-Protein Coding RNA 2099 2 3 5

External Ids for LINC02099 Gene

Summaries for LINC02099 Gene

GeneCards Summary for LINC02099 Gene

LINC02099 (Long Intergenic Non-Protein Coding RNA 2099) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with LINC02099 include Breast Cancer.

Additional gene information for LINC02099 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC02099 Gene

Genomics for LINC02099 Gene

GeneHancer (GH) Regulatory Elements for LINC02099 Gene

Promoters and enhancers for LINC02099 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J029746 Enhancer 0.5 ENCODE 600.7 -1.1 -1078 1.8 MAFK IKZF1 RUNX3 GATA3 LINC00589 LINC02099 RPL17P33
GH08J029749 Promoter/Enhancer 1.8 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +5.7 5652 9.7 ZNF652 MAFK ELF1 IKZF1 POLR2A RXRA IKZF2 CEBPA RXRB REST DUSP4 LINC02099 GC08P029814
GH08J029769 Enhancer 1.5 FANTOM5 ENCODE dbSUPER 0.3 +24.6 24587 6.2 SP1 ELF3 NKRF CEBPG RERE ZNF687 ZSCAN21 AHR NCOA3 TFE3 ENSG00000271869 DUSP4 LINC02099 GC08P029814
GH08J029764 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.4 +18.3 18327 3.9 CTBP1 SMARCC1 CEBPB RCOR1 JUND MAX EP300 ZNF217 DPF2 TCF7L2 DUSP4 LINC02099 GC08P029814
GH08J029777 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.3 +30.1 30092 2.4 POLR2A JUND MYC MAX LINC02099 GC08P029814
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02099 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02099 Gene

Genomic Locations for LINC02099 Gene
chr8:29,748,309-29,798,492
(GRCh38/hg38)
Size:
50,184 bases
Orientation:
Plus strand
chr8:29,605,825-29,656,008
(GRCh37/hg19)
Size:
50,184 bases
Orientation:
Plus strand

Genomic View for LINC02099 Gene

Genes around LINC02099 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02099 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02099 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02099 Gene

Proteins for LINC02099 Gene

Post-translational modifications for LINC02099 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02099 Gene

Domains & Families for LINC02099 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC02099 Gene

Function for LINC02099 Gene

Phenotypes From GWAS Catalog for LINC02099 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02099 Gene

Localization for LINC02099 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02099 Gene

Pathways & Interactions for LINC02099 Gene

PathCards logo

SuperPathways for LINC02099 Gene

No Data Available

Interacting Proteins for LINC02099 Gene

Gene Ontology (GO) - Biological Process for LINC02099 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02099 Gene

Drugs & Compounds for LINC02099 Gene

No Compound Related Data Available

Transcripts for LINC02099 Gene

mRNA/cDNA for LINC02099 Gene

(4) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(6) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02099 Gene

No ASD Table

Relevant External Links for LINC02099 Gene

GeneLoc Exon Structure for
LINC02099
ECgene alternative splicing isoforms for
LINC02099

Expression for LINC02099 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02099 Gene

Orthologs for LINC02099 Gene

Evolution for LINC02099 Gene

ENSEMBL:
Gene Tree for LINC02099 (if available)
TreeFam:
Gene Tree for LINC02099 (if available)

No data available for Orthologs for LINC02099 Gene

Paralogs for LINC02099 Gene

No data available for Paralogs for LINC02099 Gene

Variants for LINC02099 Gene

Sequence variations from dbSNP and Humsavar for LINC02099 Gene

SNP ID Clin Chr 08 pos Variation AA Info Type
rs1000011513 -- 29,765,066(+) A/C genic_downstream_transcript_variant, intron_variant
rs1000012652 -- 29,760,597(+) G/C genic_downstream_transcript_variant, intron_variant
rs1000024356 -- 29,768,241(+) G/A genic_downstream_transcript_variant, intron_variant
rs1000124318 -- 29,790,556(+) G/A genic_downstream_transcript_variant, intron_variant
rs1000156997 -- 29,790,283(+) C/G genic_downstream_transcript_variant, intron_variant

Additional Variant Information for LINC02099 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02099

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02099 Gene

Disorders for LINC02099 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LINC02099 Gene - From: LncRNADisease

Disorder Aliases PubMed IDs
breast cancer
  • breast tumor
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC02099

genes like me logo Genes that share disorders with LINC02099: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC02099 Gene

Publications for LINC02099 Gene

  1. Long noncoding RNA expression profile in fibroblast-like synoviocytes from patients with rheumatoid arthritis. (PMID: 27716329) Zhang Y … Li XJ (Arthritis research & therapy 2016) 2 3 58
  2. Tissue-specific Co-expression of Long Non-coding and Coding RNAs Associated with Breast Cancer. (PMID: 27597120) Wu W … He C (Scientific reports 2016) 2 3 58
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for LINC02099 Gene

Sources for LINC02099 Gene

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