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Aliases for LINC02098 Gene
Data sources for LINC02098 Gene:
Subcategory (RNA class) for LINC02098 Gene
lncRNA
Aliases for LINC02098 Gene
- Long Intergenic Non-Protein Coding RNA 2098 (HGNC, NCBI Entrez Gene, Ensembl)
- RP11-702B10.1 (HGNC, NCBI Entrez Gene)
- LINC02098 (Ensembl, LNCipedia)
- NONHSAG010012.2 (NONCODE)
- HSALNG0088083 (LncBook)
External Ids for LINC02098 Gene
- HGNC: 52950
- NCBI Entrez Gene: 105369564
- Ensembl: ENSG00000272575
Summaries for LINC02098 Gene
GeneCards Summary for LINC02098 Gene
LINC02098 (Long Intergenic Non-Protein Coding RNA 2098) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC02098 include Esophageal Cancer.
Additional gene information for LINC02098 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02098 Gene
Genomics for LINC02098 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for LINC02098 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH11J128205 | Enhancer | 1.3 | FANTOM5 Ensembl ENCODE dbSUPER | 259.5 | +0.3 | 311 | 6.3 | CEBPB EP300 RXRA PRDM1 RFX5 TEAD3 SP2 STAT3 JUND ZBTB40 | LINC02098 ETS1 piR-47162-030 | |
| GH11J128546 | Promoter/Enhancer | 1.8 | FANTOM5 ENCODE CraniofacialAtlas dbSUPER | 4.3 | +342.0 | 341977 | 7.9 | BCL11A POLR2A CTCF SIN3A ZNF395 VEZF1 TRIM22 IRF4 RXRA EBF1 | ETS1 LINC02098 FLI1 lnc-FLI1-4 ETS1-AS1 lnc-KCNJ1-3 | |
| GH11J128238 | Enhancer | 0.5 | ENCODE | 8.8 | +31.3 | 31250 | 2.9 | SPI1 BATF MAFK JUNB HNF4A CEBPB NR2F2 SP1 | LINC02098 ETS1 piR-39099-058 HSALNG0088091-001 | |
| GH11J128218 | Enhancer | 0.3 | ENCODE | 6.4 | +10.3 | 10279 | 0.4 | EP300 | LINC02098 piR-38351-090 piR-53063-042 ETS1 | |
| GH11J128222 | Enhancer | 0.2 | ENCODE | 5.8 | +13.9 | 13949 | 1 | piR-38351-090 ETS1-AS1 ETS1 LINC02098 piR-53063-042 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LINC02098 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for LINC02098 Gene
Latest Assembly
- chr11:128,208,749-128,241,441
- (GRCh38/hg38)
- Size:
- 32,693 bases
- Orientation:
- Plus strand
Previous Assembly
- chr11:128,078,661-128,111,336
- (GRCh37/hg19 by Entrez Gene)
- Size:
- 32,676 bases
- Orientation:
- Plus strand
- chr11:128,078,724-128,111,334
- (GRCh37/hg19 by Ensembl)
- Size:
- 32,611 bases
- Orientation:
- Plus strand
Genomic View for LINC02098 Gene
Genes around LINC02098 on UCSC Golden Path with GeneCards custom track
LINC02098 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
- Cytogenetic band:
-
- 11q24.3 by HGNC
- 11q24.3 by Entrez Gene
- 11q24.3 by Ensembl
LINC02098 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LINC02098 Gene
Proteins for LINC02098 Gene
Post-translational modifications for LINC02098 Gene
No Post-translational modifications
No data available for DME Specific Peptides for LINC02098 Gene
Domains & Families for LINC02098 Gene
Gene Families for LINC02098 Gene
No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02098 Gene
Function for LINC02098 Gene
Phenotypes From GWAS Catalog for LINC02098 Gene
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Cell Lines for research
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02098 Gene
Localization for LINC02098 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02098 Gene
Transcripts for LINC02098 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02098 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS0000788A51_9606 | lncRNA | 475 | 4 |
Ensembl: ENST00000608492 (view in UCSC) , LncBook: HSALNT0183192, LNCipedia: LINC02098:7, NONCODE: NONHSAT159869.1, |
| URS0000DB7ACC_9606 | lncRNA | 978 | 1 |
Ensembl: ENST00000650607 (view in UCSC) , |
| URS0000EF5075_9606 | lncRNA | 775 | 1 |
Ensembl: ENST00000609260 (view in UCSC) , |
| URS0000BC4413_9606 | lncRNA | 538 | 1 |
RefSeq: NR_146647, |
| URS0000EEEC34_9606 | lncRNA | 438 | 1 |
Ensembl: ENST00000667926 (view in UCSC) , |
LINC02098 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for LINC02098 Gene
- 3 NCBI additional mRNA sequence :
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Relevant External Links for LINC02098 Gene
- GeneLoc Exon Structure for
- LINC02098
Expression for LINC02098 Gene
No Expression Related Data Available
No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02098 Gene
Orthologs for LINC02098 Gene
No data available for Orthologs for LINC02098 Gene
Paralogs for LINC02098 Gene
No data available for Paralogs for LINC02098 Gene
Variants for LINC02098 Gene
All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).
Additional Variant Information for LINC02098 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- LINC02098
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02098 Gene
Disorders for LINC02098 Gene
| Disorder | Aliases | PubMed IDs |
|---|---|---|
| esophageal cancer |
|
Search LINC02098 in MalaCards
View complete list of genes associated with diseases
Additional Disease Information for LINC02098
No data available for UniProtKB/Swiss-Prot and Genatlas for LINC02098 Gene
Publications for LINC02098 Gene
- Protein-coding genes combined with long non-coding RNAs predict prognosis in esophageal squamous cell carcinoma patients as a novel clinical multi-dimensional signature. (PMID: 27714034) Guo JC … Xu LY (Molecular bioSystems 2016) 2 3 74
Products for LINC02098 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
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- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LINC02098
- Origene Custom Protein Services for LINC02098
- Browse OriGene Inhibitory RNA Products For LINC02098
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for LINC02098
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For LINC02098
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for LINC02098
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for LINC02098
- Search GeneCopoeia for miRNA 3'UTR Target clone products for LINC02098
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for LINC02098
Sources for LINC02098 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM® (Updated: 05-Mar-2021)
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) MedlinePlus Genetics
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNAcentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Open Targets Platform
- (175) 5SRRNADB
- (176) snoDB
- (177) MirGeneDB