Aliases for LINC02098 Gene

Data sources for LINC02098 Gene:

Subcategory (RNA class) for LINC02098 Gene

lncRNA

Aliases for LINC02098 Gene

External Ids for LINC02098 Gene

Summaries for LINC02098 Gene

GeneCards Summary for LINC02098 Gene

LINC02098 (Long Intergenic Non-Protein Coding RNA 2098) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC02098 include Esophageal Cancer.

Additional gene information for LINC02098 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02098 Gene

Genomics for LINC02098 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02098 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J128205 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 259.5 +0.3 311 6.3 CEBPB EP300 RXRA PRDM1 RFX5 TEAD3 SP2 STAT3 JUND ZBTB40 LINC02098 ETS1 piR-47162-030
GH11J128546 Promoter/Enhancer 1.8 FANTOM5 ENCODE CraniofacialAtlas dbSUPER 4.3 +342.0 341977 7.9 BCL11A POLR2A CTCF SIN3A ZNF395 VEZF1 TRIM22 IRF4 RXRA EBF1 ETS1 LINC02098 FLI1 lnc-FLI1-4 ETS1-AS1 lnc-KCNJ1-3
GH11J128238 Enhancer 0.5 ENCODE 8.8 +31.3 31250 2.9 SPI1 BATF MAFK JUNB HNF4A CEBPB NR2F2 SP1 LINC02098 ETS1 piR-39099-058 HSALNG0088091-001
GH11J128218 Enhancer 0.3 ENCODE 6.4 +10.3 10279 0.4 EP300 LINC02098 piR-38351-090 piR-53063-042 ETS1
GH11J128222 Enhancer 0.2 ENCODE 5.8 +13.9 13949 1 piR-38351-090 ETS1-AS1 ETS1 LINC02098 piR-53063-042
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02098 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02098 Gene

Latest Assembly
chr11:128,208,749-128,241,441
(GRCh38/hg38)
Size:
32,693 bases
Orientation:
Plus strand

Previous Assembly
chr11:128,078,661-128,111,336
(GRCh37/hg19 by Entrez Gene)
Size:
32,676 bases
Orientation:
Plus strand

chr11:128,078,724-128,111,334
(GRCh37/hg19 by Ensembl)
Size:
32,611 bases
Orientation:
Plus strand

Genomic View for LINC02098 Gene

Genes around LINC02098 on UCSC Golden Path with GeneCards custom track
LINC02098 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC02098 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02098 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02098 Gene

Proteins for LINC02098 Gene

Post-translational modifications for LINC02098 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02098 Gene

Domains & Families for LINC02098 Gene

Gene Families for LINC02098 Gene

genes like me logo Genes that share domains with LINC02098: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02098 Gene

Function for LINC02098 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02098 Gene

Localization for LINC02098 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02098 Gene

Pathways & Interactions for LINC02098 Gene

PathCards logo

SuperPathways for LINC02098 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02098 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02098 Gene

Drugs & Compounds for LINC02098 Gene

No Compound Related Data Available

Transcripts for LINC02098 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02098 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000788A51_9606 lncRNA 475 4

Ensembl: ENST00000608492 (view in UCSC) ,

LncBook: HSALNT0183192,

LNCipedia: LINC02098:7,

NONCODE: NONHSAT159869.1,

URS0000DB7ACC_9606 lncRNA 978 1

Ensembl: ENST00000650607 (view in UCSC) ,

URS0000EF5075_9606 lncRNA 775 1

Ensembl: ENST00000609260 (view in UCSC) ,

URS0000BC4413_9606 lncRNA 538 1

RefSeq: NR_146647,

URS0000EEEC34_9606 lncRNA 438 1

Ensembl: ENST00000667926 (view in UCSC) ,

LINC02098 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02098 Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02098 Gene

No ASD Table

Relevant External Links for LINC02098 Gene

GeneLoc Exon Structure for
LINC02098

Expression for LINC02098 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02098 Gene

Orthologs for LINC02098 Gene

Evolution for LINC02098 Gene

ENSEMBL:
Gene Tree for LINC02098 (if available)
TreeFam:
Gene Tree for LINC02098 (if available)

No data available for Orthologs for LINC02098 Gene

Paralogs for LINC02098 Gene

No data available for Paralogs for LINC02098 Gene

Variants for LINC02098 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC02098 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for LINC02098 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02098

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02098 Gene

Disorders for LINC02098 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LINC02098 Gene - From: LNC and COP

Disorder Aliases PubMed IDs
esophageal cancer
  • esophageal cancer, somatic
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC02098

genes like me logo Genes that share disorders with LINC02098: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC02098 Gene

Publications for LINC02098 Gene

  1. Protein-coding genes combined with long non-coding RNAs predict prognosis in esophageal squamous cell carcinoma patients as a novel clinical multi-dimensional signature. (PMID: 27714034) Guo JC … Xu LY (Molecular bioSystems 2016) 2 3 74

Products for LINC02098 Gene

Sources for LINC02098 Gene