Aliases for LINC02097 Gene

Subcategory (RNA class) for LINC02097 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC02097 Gene

  • Long Intergenic Non-Protein Coding RNA 2097 2 3 5
  • LINC02097 2 5 165
  • NONHSAG022653.2 91
  • HSALNG0118533 164

External Ids for LINC02097 Gene

Summaries for LINC02097 Gene

GeneCards Summary for LINC02097 Gene

LINC02097 (Long Intergenic Non-Protein Coding RNA 2097) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02097 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02097 Gene

Genomics for LINC02097 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02097 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J072110 Promoter/Enhancer 0.9 Ensembl CraniofacialAtlas 0.3 +38.6 38597 1.1 ZNF600 ZNF341 SCRT2 KLF4 PKNOX1 ZFHX2 RCOR1 KLF17 KLF1 CHD2 LOC107987249 SOX9 LINC02097 SOX9-AS1
GH17J072107 Enhancer 0.5 FANTOM5 Ensembl CraniofacialAtlas 0.3 +35.0 34968 2.6 LOC107987249 SOX9 LINC02097 SOX9-AS1
GH17J072115 Promoter 0.6 Ensembl 0.3 +43.4 43368 0.2 CREB1 NR2F1 EZH2 CREM LOC107987249 SOX9 LINC02097 SOX9-AS1
GH17J072104 Enhancer 0.4 Ensembl 0.3 +32.7 32668 1.2 CREB1 ATF7 ATF2 LOC107987249 SOX9 LINC02097 SOX9-AS1
GH17J072096 Enhancer 0.3 Ensembl 0.3 +25.1 25069 0.7 CTCF FOS LOC107987249 SOX9 LINC02097 SOX9-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02097 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02097 Gene

Genomic Locations for LINC02097 Gene
chr17:72,072,333-72,103,035
(GRCh38/hg38)
Size:
30,703 bases
Orientation:
Plus strand
chr17:70,068,474-70,089,622
(GRCh37/hg19)
Size:
21,149 bases
Orientation:
Plus strand

Genomic View for LINC02097 Gene

Genes around LINC02097 on UCSC Golden Path with GeneCards custom track
LINC02097 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC02097 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02097 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02097 Gene

Proteins for LINC02097 Gene

Post-translational modifications for LINC02097 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02097 Gene

Domains & Families for LINC02097 Gene

Gene Families for LINC02097 Gene

genes like me logo Genes that share domains with LINC02097: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02097 Gene

Function for LINC02097 Gene

Phenotypes From GWAS Catalog for LINC02097 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02097 Gene

Localization for LINC02097 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02097 Gene

Pathways & Interactions for LINC02097 Gene

PathCards logo

SuperPathways for LINC02097 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02097 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02097 Gene

Drugs & Compounds for LINC02097 Gene

No Compound Related Data Available

Transcripts for LINC02097 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02097 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00000DF453_9606 lncRNA 2063 4

Ensembl: ENST00000419257 (view in UCSC) ,

LncBook: HSALNT0244825,

LNCipedia: LINC02097:4,

NONCODE: NONHSAT055656.2,

URS000075AAE6_9606 lncRNA 2063 2

HGNC: 52948,

RefSeq: NR_110827,

URS0000EEC85D_9606 lncRNA 2683 1

Ensembl: ENST00000666489 (view in UCSC) ,

URS0000EEE603_9606 lncRNA 1402 1

Ensembl: ENST00000665568 (view in UCSC) ,

URS0000EF42CB_9606 lncRNA 748 1

Ensembl: ENST00000654175 (view in UCSC) ,

LINC02097 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02097 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02097 Gene

No ASD Table

Relevant External Links for LINC02097 Gene

GeneLoc Exon Structure for
LINC02097

Expression for LINC02097 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC02097

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02097 Gene

Orthologs for LINC02097 Gene

Evolution for LINC02097 Gene

ENSEMBL:
Gene Tree for LINC02097 (if available)
TreeFam:
Gene Tree for LINC02097 (if available)

No data available for Orthologs for LINC02097 Gene

Paralogs for LINC02097 Gene

No data available for Paralogs for LINC02097 Gene

Variants for LINC02097 Gene

Additional dbSNP identifiers (rs#s) for LINC02097 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC02097 Gene

Variant ID Type Subtype PubMed ID
esv3381146 CNV duplication 20981092
esv3573809 CNV gain 25503493
nsv833530 CNV gain+loss 17160897

Additional Variant Information for LINC02097 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02097

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC02097 Gene

Disorders for LINC02097 Gene

No disorders were found for LINC02097 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02097 Gene

Publications for LINC02097 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for LINC02097 Gene

Products for LINC02097 Gene

Sources for LINC02097 Gene