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Aliases for LINC02093 Gene

Subcategory (RNA class) for LINC02093 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC02093 Gene

  • Long Intergenic Non-Protein Coding RNA 2093 2 3 5

External Ids for LINC02093 Gene

Summaries for LINC02093 Gene

GeneCards Summary for LINC02093 Gene

LINC02093 (Long Intergenic Non-Protein Coding RNA 2093) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC02093 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC02093 Gene

Genomics for LINC02093 Gene

GeneHancer (GH) Regulatory Elements for LINC02093 Gene

Promoters and enhancers for LINC02093 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J013306 Enhancer 0.8 ENCODE 600.7 +0.0 42 0.2 CTCF CEBPG ZSCAN21 TRIM24 SP7 PRDM1 ZNF644 FOSL2 CEBPA GATAD2A LINC02093 GC17P013217
GH17J013307 Enhancer 0.7 Ensembl 600.7 +0.3 290 0.2 ZSCAN21 SP7 PRDM1 FOSL2 GATAD2A CTCF ZNF639 ZNF629 ATF2 ZNF217 LINC02093 HS3ST3A1 GC17P013217
GH17J013345 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 0.3 -40.3 -40311 3.8 CC2D1A TRIM24 SP7 FOSL2 ZBTB33 ATF1 ZNF639 PKNOX1 ZNF629 SP2 HS3ST3A1 LOC105371543 LINC02093
GH17J013322 Enhancer 0.8 ENCODE 0.4 -15.7 -15686 0.8 ZNF652 RERE TFE3 PPARG ZNF644 HMG20B SOX13 CEBPA GATAD2A RXRB HS3ST3A1 LINC02093 LOC105371543
GH17J013324 Enhancer 0.6 ENCODE 0.4 -17.4 -17428 0.2 CEBPG KAT8 CEBPA GATAD2A RXRB RCOR2 SOX13 YY1 TEAD1 CREM LINC02093 LOC105371543
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02093 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02093 Gene

Genomic Locations for LINC02093 Gene
chr17:13,298,869-13,306,791
(GRCh38/hg38)
Size:
7,923 bases
Orientation:
Minus strand
chr17:13,202,501-13,210,077
(GRCh37/hg19)
Size:
7,577 bases
Orientation:
Minus strand

Genomic View for LINC02093 Gene

Genes around LINC02093 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02093 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02093 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02093 Gene

Proteins for LINC02093 Gene

Post-translational modifications for LINC02093 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02093 Gene

Domains & Families for LINC02093 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC02093 Gene

Function for LINC02093 Gene

Phenotypes From GWAS Catalog for LINC02093 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02093 Gene

Localization for LINC02093 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02093 Gene

Pathways & Interactions for LINC02093 Gene

PathCards logo

SuperPathways for LINC02093 Gene

No Data Available

Interacting Proteins for LINC02093 Gene

Gene Ontology (GO) - Biological Process for LINC02093 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02093 Gene

Drugs & Compounds for LINC02093 Gene

No Compound Related Data Available

Transcripts for LINC02093 Gene

mRNA/cDNA for LINC02093 Gene

(1) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(3) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02093 Gene

No ASD Table

Relevant External Links for LINC02093 Gene

GeneLoc Exon Structure for
LINC02093
ECgene alternative splicing isoforms for
LINC02093

Expression for LINC02093 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02093 Gene

Orthologs for LINC02093 Gene

Evolution for LINC02093 Gene

ENSEMBL:
Gene Tree for LINC02093 (if available)
TreeFam:
Gene Tree for LINC02093 (if available)

No data available for Orthologs for LINC02093 Gene

Paralogs for LINC02093 Gene

No data available for Paralogs for LINC02093 Gene

Variants for LINC02093 Gene

Sequence variations from dbSNP and Humsavar for LINC02093 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1000149816 -- 13,303,234(-) C/T intron_variant
rs1000833636 -- 13,307,646(-) T/C upstream_transcript_variant
rs1000834214 -- 13,301,794(-) T/C intron_variant
rs1000928054 -- 13,307,443(-) C/T upstream_transcript_variant
rs1000991075 -- 13,306,379(-) C/A intron_variant

Additional Variant Information for LINC02093 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02093

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02093 Gene

Disorders for LINC02093 Gene

Additional Disease Information for LINC02093

No disorders were found for LINC02093 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02093 Gene

Publications for LINC02093 Gene

No publications were found for LINC02093 Gene.

No data available for External Links for LINC02093 Gene

Products for LINC02093 Gene

Sources for LINC02093 Gene

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