Aliases for LINC02092 Gene

Subcategory (RNA class) for LINC02092 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC02092 Gene

  • Long Intergenic Non-Protein Coding RNA 2092 2 3 5
  • LINC02092 2 5 165
  • NONHSAG022682.2 91
  • HSALNG0118607 164

External Ids for LINC02092 Gene

Summaries for LINC02092 Gene

GeneCards Summary for LINC02092 Gene

LINC02092 (Long Intergenic Non-Protein Coding RNA 2092) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02092 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02092 Gene

Genomics for LINC02092 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02092 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J073784 Enhancer 0.9 Ensembl ENCODE CraniofacialAtlas 600.7 -0.4 -374 4.2 CREB1 ZNF629 RFX1 SCRT2 RAD21 BMI1 TAL1 ZNF652 CBFA2T3 LINC02092 LINC00469 lnc-RPL38-5 SDK2 RPL38
GH17J073796 Enhancer 1.1 Ensembl ENCODE 0.4 +12.3 12325 4.4 HNRNPL GATAD2A ATF7 REST TFE3 SOX13 NFKBIZ RCOR2 RBFOX2 RXRB NAT9 LINC00469 MN309174-285 LINC02092 SDK2 RPL38
GH17J073795 Enhancer 0.9 ENCODE 0.4 +9.2 9182 0.2 GATAD2A REST SOX13 NFKBIZ RXRB SP1 CEBPA ETS1 TCF7 FOXA2 LINC00469 LINC02092 MN309174-285 SDK2 RPL38
GH17J073783 Enhancer 0.6 ENCODE 0.7 -3.4 -3438 0.2 CTCF KDM1A ZNF184 BCOR ZNF654 CHD4 ZFP64 ZNF143 RAD21 SMARCA5 LINC00469 LINC02092 lnc-RPL38-5 SDK2 RPL38
GH17J073781 Enhancer 0.5 Ensembl 0.7 -4.1 -4074 0.4 KDM1A ZFHX2 ZMYM3 CHD4 EGR2 SMARCA5 lnc-RPL38-5 LINC00469 LINC02092 SDK2 RPL38
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02092 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02092 Gene

Genomic Locations for LINC02092 Gene
chr17:73,786,675-73,800,966
(GRCh38/hg38)
Size:
14,292 bases
Orientation:
Plus strand

Genomic View for LINC02092 Gene

Genes around LINC02092 on UCSC Golden Path with GeneCards custom track
LINC02092 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC02092 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02092 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02092 Gene

Proteins for LINC02092 Gene

Post-translational modifications for LINC02092 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02092 Gene

Domains & Families for LINC02092 Gene

Gene Families for LINC02092 Gene

genes like me logo Genes that share domains with LINC02092: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02092 Gene

Function for LINC02092 Gene

Phenotypes From GWAS Catalog for LINC02092 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02092 Gene

Localization for LINC02092 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02092 Gene

Pathways & Interactions for LINC02092 Gene

PathCards logo

SuperPathways for LINC02092 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02092 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02092 Gene

Drugs & Compounds for LINC02092 Gene

No Compound Related Data Available

Transcripts for LINC02092 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02092 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000016C968_9606 lncRNA 724 4

Ensembl: ENST00000584660 (view in UCSC) ,

LncBook: HSALNT0245023,

LNCipedia: LINC02092:5,

NONCODE: NONHSAT055743.2,

URS000075BBEB_9606 lncRNA 2474 2

HGNC: 52943,

RefSeq: NR_040020,

URS00001AE941_9606 lncRNA 2472 2

Ensembl: ENST00000455366 (view in UCSC) ,

LNCipedia: LINC02092:6,

URS0000EEFC46_9606 lncRNA 1893 1

Ensembl: ENST00000668259 (view in UCSC) ,

URS0000EEC96A_9606 lncRNA 1583 1

Ensembl: ENST00000657440 (view in UCSC) ,

LINC02092 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02092 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02092 Gene

No ASD Table

Relevant External Links for LINC02092 Gene

GeneLoc Exon Structure for
LINC02092

Expression for LINC02092 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC02092

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02092 Gene

Orthologs for LINC02092 Gene

Evolution for LINC02092 Gene

ENSEMBL:
Gene Tree for LINC02092 (if available)
TreeFam:
Gene Tree for LINC02092 (if available)

No data available for Orthologs for LINC02092 Gene

Paralogs for LINC02092 Gene

No data available for Paralogs for LINC02092 Gene

Variants for LINC02092 Gene

Additional dbSNP identifiers (rs#s) for LINC02092 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC02092 Gene

Variant ID Type Subtype PubMed ID
dgv12e196 CNV duplication 17116639

Additional Variant Information for LINC02092 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02092

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC02092 Gene

Disorders for LINC02092 Gene

Additional Disease Information for LINC02092

No disorders were found for LINC02092 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02092 Gene

Publications for LINC02092 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for LINC02092 Gene

Products for LINC02092 Gene

Sources for LINC02092 Gene