Aliases for LINC02091 Gene

Subcategory (RNA class) for LINC02091 Gene

ncRNA

Quality Score for this RNA gene is

15

Aliases for LINC02091 Gene

  • Long Intergenic Non-Protein Coding RNA 2091 2 3 5
  • LINC02091 2 170
  • HSALNG0113700 169
  • NONHSAG020396 94

External Ids for LINC02091 Gene

Summaries for LINC02091 Gene

GeneCards Summary for LINC02091 Gene

LINC02091 (Long Intergenic Non-Protein Coding RNA 2091) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LINC02091 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02091 Gene

Genomics for LINC02091 Gene

GeneHancer (GH) Regulatory Elements for LINC02091 Gene

Promoters and enhancers for LINC02091 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J000198 Promoter/Enhancer 1.2 EPDnew Ensembl ENCODE CraniofacialAtlas 771.1 +1.5 1530 2.6 SP1 RXRA TFDP1 NR2F2 RAD21 EZH2 MAX NFIA KDM1A HNF4A LINC02091 lnc-SCGB1C2-8 DOC2B RFLNB RPH3AL
GH17J000201 Enhancer 0.3 Ensembl 757.6 -0.3 -295 0.6 ZFHX2 LINC02091 RFLNB RPH3AL lnc-SCGB1C2-7
GH17J000177 Promoter/Enhancer 1.6 EPDnew Ensembl ENCODE 16.3 +21.5 21497 5 ZNF148 SP1 MAFK SP7 GLIS2 ZIC2 CEBPA GATAD2A PATZ1 ZNF692 DOC2B lnc-RPH3AL-100 LINC02091 RPH3AL DBIL5P piR-52171-002
GH17J000193 Enhancer 0.9 Ensembl ENCODE 26 +7.2 7229 0.4 RBPJ ELF3 SP7 SP5 ZNF644 KAT8 GLIS2 CEBPA GATAD2A RXRB LINC02091 RPH3AL lnc-SCGB1C2-8 piR-35674-203
GH17J000182 Enhancer 0.9 FANTOM5 ENCODE 12 +18.8 18849 0.2 HLF ZNF148 SP1 CEBPG SP7 GLIS2 CEBPA RXRA GATAD2A PATZ1 DOC2B lnc-RPH3AL-100 LINC02091 RPH3AL piR-35674-203
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02091 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02091 Gene

Genomic Locations for LINC02091 Gene
chr17:183,824-201,420
(GRCh38/hg38)
Size:
17,597 bases
Orientation:
Minus strand
chr17:33,615-41,378
(GRCh37/hg19)
Size:
7,764 bases
Orientation:
Minus strand

Genomic View for LINC02091 Gene

Genes around LINC02091 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02091 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02091 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02091 Gene

Proteins for LINC02091 Gene

Post-translational modifications for LINC02091 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02091 Gene

Domains & Families for LINC02091 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02091 Gene

Function for LINC02091 Gene

Phenotypes From GWAS Catalog for LINC02091 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02091 Gene

Localization for LINC02091 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02091 Gene

Pathways & Interactions for LINC02091 Gene

PathCards logo

SuperPathways for LINC02091 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02091 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02091 Gene

Drugs & Compounds for LINC02091 Gene

No Compound Related Data Available

Transcripts for LINC02091 Gene

mRNA/cDNA for LINC02091 Gene

(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(6) RNACentral transcripts :
(4) LNCipedia transcripts :
(3) NONCODE transcripts :
(3) LncBook transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02091 Gene

No ASD Table

Relevant External Links for LINC02091 Gene

GeneLoc Exon Structure for
LINC02091
ECgene alternative splicing isoforms for
LINC02091

Expression for LINC02091 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02091 Gene

Orthologs for LINC02091 Gene

Evolution for LINC02091 Gene

ENSEMBL:
Gene Tree for LINC02091 (if available)
TreeFam:
Gene Tree for LINC02091 (if available)

No data available for Orthologs for LINC02091 Gene

Paralogs for LINC02091 Gene

No data available for Paralogs for LINC02091 Gene

Variants for LINC02091 Gene

Sequence variations from dbSNP and Humsavar for LINC02091 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1000375562 -- 185,796(-) G/A intron_variant
rs1000380649 -- 185,432(-) C/A/T intron_variant
rs1000667717 -- 186,643(-) T/G intron_variant
rs1000746527 -- 185,567(-) C/T intron_variant
rs1000895983 -- 189,170(-) G/A upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC02091 Gene

Variant ID Type Subtype PubMed ID
dgv3068n100 CNV gain 25217958
dgv3069n100 CNV gain 25217958
dgv3070n100 CNV gain 25217958
dgv3071n100 CNV gain 25217958
dgv5347n54 CNV gain 21841781
dgv5358n54 CNV loss 21841781
esv3639614 CNV gain 21293372
esv3639615 CNV gain 21293372
nsv1056138 CNV loss 25217958
nsv1058245 CNV gain+loss 25217958
nsv469538 CNV loss 16826518
nsv573862 CNV gain 21841781
nsv573909 CNV gain 21841781
nsv827848 CNV gain 20364138
nsv952086 CNV deletion 24416366

Additional Variant Information for LINC02091 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02091

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC02091 Gene

Disorders for LINC02091 Gene

Additional Disease Information for LINC02091

No disorders were found for LINC02091 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02091 Gene

Publications for LINC02091 Gene

  1. Genome-wide association study implicates PARD3B-based AIDS restriction. (PMID: 21502085) Troyer JL … O'Brien SJ (The Journal of infectious diseases 2011) 3 56

Products for LINC02091 Gene

Sources for LINC02091 Gene