Aliases for LINC02086 Gene

Data sources for LINC02086 Gene:

RNA type for LINC02086 Gene

lncRNA

Aliases for LINC02086 Gene

External Ids for LINC02086 Gene

Previous GeneCards Identifiers for LINC02086 Gene

  • GC17P048643

Summaries for LINC02086 Gene

GeneCards Summary for LINC02086 Gene

LINC02086 (Long Intergenic Non-Protein Coding RNA 2086) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC02086 include Colorectal Cancer.

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02086 Gene

Genomics for LINC02086 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02086 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J048645 Promoter/Enhancer 1.7 EPDnew Ensembl ENCODE dbSUPER 250.7 -0.1 -122 2.8 IKZF1 ZNF600 ZNF580 NFIC ZIC2 ZBTB10 SMAD5 ZNF341 KLF7 IRF2 HOXB9 ENSG00000272763 LOC101060400 LINC02086 ENSG00000230532 HOXB2 ENSG00000266821 ATP5MC1 CALCOCO2 MRPL10
GH17J048636 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.4 -10.2 -10213 0.8 ZNF600 MYC ZNF592 REST KLF11 BHLHE40 HOMEZ CTCF THAP11 HCFC1 LRRC46 MRPL10 HOXB7 ENSG00000272763 LINC02086 LOC101060400 PRAC2
GH17J048642 Enhancer 0.7 ENCODE dbSUPER 0.7 -4.4 -4358 0.2 ETS1 POLR2A CTCF ZBTB33 SIN3A EZH2 XRCC5 ENSG00000272763 LOC101060400 LINC02086 HOXB7 PRAC2
GH17J048633 Promoter/Enhancer 1.1 EPDnew Ensembl dbSUPER 0.4 -13.0 -13037 0.6 CBX8 ZBTB33 CEBPB CTCF MLLT1 ATF3 TRIM24 BCOR USF1 EZH2 HOXB7 MIR196A1 HOXB9 LRRC46 HOXB2 NFE2L1-DT HOXB-AS4 ENSG00000272763 LINC02086 PRAC2
GH17J048671 Promoter/Enhancer 1.1 ENCODE CraniofacialAtlas 0.4 +25.0 24993 0.6 ZNF654 ZNF600 NFIC CTCF REST TRIM22 ZNF217 ELF1 RAD21 SMC3 HOXB2 HSALNG0117109 LINC02086 RF00017-2189 HOXB7 PRAC2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02086 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02086 Gene

Latest Assembly
chr17:48,646,922-48,707,347
(GRCh38/hg38)
Size:
60,426 bases
Orientation:
Plus strand

Previous Assembly
chr17:46,782,360-46,784,708
(GRCh37/hg19 by Ensembl)
Size:
2,349 bases
Orientation:
Plus strand

Genomic View for LINC02086 Gene

Genes around LINC02086 on UCSC Golden Path with GeneCards custom track
LINC02086 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC02086 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02086 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02086 Gene

Proteins for LINC02086 Gene

Post-translational modifications for LINC02086 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02086 Gene

Domains & Families for LINC02086 Gene

Gene Families for LINC02086 Gene

genes like me logo Genes that share domains with LINC02086: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02086 Gene

Function for LINC02086 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02086 Gene

Localization for LINC02086 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02086 Gene

Pathways & Interactions for LINC02086 Gene

PathCards logo

SuperPathways for LINC02086 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02086 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02086 Gene

Drugs & Compounds for LINC02086 Gene

No Compound Related Data Available

Transcripts for LINC02086 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02086 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS0000364213_9606 lncRNA 1438 4

Ensembl: ENST00000478824 (view in UCSC) ,

LncBook: HSALNT0242018,

LNCipedia: LINC02086:20,

NONCODE: NONHSAT054468.2,

URS0000811AF9_9606 lncRNA 792 4

Ensembl: ENST00000628006 (view in UCSC) ,

LncBook: HSALNT0242003,

LNCipedia: LINC02086:12,

NONCODE: NONHSAT175310.1,

URS0000811FFB_9606 lncRNA 776 4

Ensembl: ENST00000575202 (view in UCSC) ,

LncBook: HSALNT0242005,

LNCipedia: LINC02086:13,

NONCODE: NONHSAT175311.1,

URS00008119DA_9606 lncRNA 684 4

Ensembl: ENST00000628749 (view in UCSC) ,

LncBook: HSALNT0242009,

LNCipedia: LINC02086:15,

NONCODE: NONHSAT175314.1,

URS0000811AA5_9606 lncRNA 2095 3

Ensembl: ENST00000492522 (view in UCSC) ,

LNCipedia: LINC02086:17,

NONCODE: NONHSAT175315.1,

LINC02086 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02086 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02086 Gene

No ASD Table

Relevant External Links for LINC02086 Gene

GeneLoc Exon Structure for
LINC02086

Expression for LINC02086 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02086 Gene

Orthologs for LINC02086 Gene

Evolution for LINC02086 Gene

ENSEMBL:
Gene Tree for LINC02086 (if available)
TreeFam:
Gene Tree for LINC02086 (if available)
Alliance of Genome Resources:
Additional Orthologs for LINC02086

No data available for Orthologs for LINC02086 Gene

Paralogs for LINC02086 Gene

No data available for Paralogs for LINC02086 Gene

Variants for LINC02086 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC02086 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for LINC02086 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02086
Leiden Open Variation Database (LOVD)
LINC02086

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02086 Gene

Disorders for LINC02086 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LINC02086 Gene - From: LNC

Disorder Aliases PubMed IDs
colorectal cancer
  • crc
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC02086

genes like me logo Genes that share disorders with LINC02086: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC02086 Gene

Publications for LINC02086 Gene

  1. Microarray Analysis of Long Non-coding RNA Expression Profile Associated with 5-Fluorouracil-Based Chemoradiation Resistance in Colorectal Cancer Cells. (PMID: 25921151) Xiong W … Li WH (Asian Pacific journal of cancer prevention : APJCP 2015) 72

Products for LINC02086 Gene

Sources for LINC02086 Gene