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LINC02080 (Long Intergenic Non-Protein Coding RNA 2080) is an RNA Gene, and is affiliated with the lncRNA class.
GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
---|---|---|---|---|---|---|---|---|---|---|
GH17J076797 | Enhancer | 0.3 | Ensembl | 250.7 | -1.4 | -1443 | 0.8 | SP1 | LINC02080 UNC13D MFSD11 HSALNG0118876 lnc-MFSD11-1 SRSF2 MGAT5B | |
GH17J076816 | Enhancer | 0.8 | Ensembl ENCODE | 7.4 | +17.8 | 17758 | 0.8 | CTCF REST TRIM22 SMC3 RAD21 BHLHE40 ZBTB48 RB1 ZNF143 GLIS1 | LINC02080 MXRA7 piR-53063-083 LOC107985089 MGAT5B SRSF2 | |
GH17J076819 | Enhancer | 0.6 | Ensembl | 6.5 | +21.3 | 21258 | 1 | ZIC2 EBF1 RB1 GLIS1 RCOR1 CTCF YBX1 TCF12 GATAD2B ZNF423 | LINC02080 LOC107985089 piR-53063-083 MGAT5B SRSF2 | |
GH17J076719 | Enhancer | 0.3 | dbSUPER | 5.6 | -78.6 | -78600 | 0.7 | PRDM6 | ENSG00000274051 MXRA7 LINC02080 piR-47255 lnc-MXRA7-1 JMJD6 METTL23 SNHG16 | |
GH17J076805 | Enhancer | 0.2 | Ensembl | 0.4 | +6.4 | 6358 | 0.4 | piR-53063-083 RNU6-97P MFSD11 LINC02080 MGAT5B SRSF2 |
RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
---|---|---|---|---|
URS000075AB8C_9606 | lncRNA | 3088 | 4 |
RefSeq: NR_110837, Ensembl: ENST00000585863 (view in UCSC) , LNCipedia: LINC02080:6, NONCODE: NONHSAT175637.1, |
URS00008B23E7_9606 | lncRNA | 758 | 2 |
LNCipedia: LINC02080:7, NONCODE: NONHSAT056090.2, |
URS000030446C_9606 | lncRNA | 2270 | 1 |
LNCipedia: LINC02080:5, |
Variant ID | Type | Subtype | PubMed ID |
---|---|---|---|
nsv1059991 | CNV | loss | 25217958 |
nsv833550 | CNV | loss | 17160897 |
No disorders were found for LINC02080 Gene.