Aliases for LINC02080 Gene

Subcategory (RNA class) for LINC02080 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for LINC02080 Gene

  • Long Intergenic Non-Protein Coding RNA 2080 2 3 5
  • LINC02080 2 5 165
  • NONHSAG022838.2 91
  • FLJ30938 2

External Ids for LINC02080 Gene

Summaries for LINC02080 Gene

GeneCards Summary for LINC02080 Gene

LINC02080 (Long Intergenic Non-Protein Coding RNA 2080) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02080 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02080 Gene

Genomics for LINC02080 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02080 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02080 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02080 Gene

Genomic Locations for LINC02080 Gene
chr17:76,799,044-76,823,054
(GRCh38/hg38)
Size:
24,011 bases
Orientation:
Plus strand
chr17:74,795,126-74,802,035
(GRCh37/hg19)
Size:
6,910 bases
Orientation:
Plus strand

Genomic View for LINC02080 Gene

Genes around LINC02080 on UCSC Golden Path with GeneCards custom track
LINC02080 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC02080 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02080 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02080 Gene

Proteins for LINC02080 Gene

Post-translational modifications for LINC02080 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02080 Gene

Domains & Families for LINC02080 Gene

Gene Families for LINC02080 Gene

genes like me logo Genes that share domains with LINC02080: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02080 Gene

Function for LINC02080 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02080 Gene

Localization for LINC02080 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02080 Gene

Pathways & Interactions for LINC02080 Gene

PathCards logo

SuperPathways for LINC02080 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02080 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02080 Gene

Drugs & Compounds for LINC02080 Gene

No Compound Related Data Available

Transcripts for LINC02080 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02080 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075AB8C_9606 lncRNA 3085 5

HGNC: 52928,

RefSeq: NR_110837,

Ensembl: ENST00000585863 (view in UCSC) ,

LNCipedia: LINC02080:6,

NONCODE: NONHSAT175637.1,

URS00008B23E7_9606 lncRNA 758 2

LNCipedia: LINC02080:7,

NONCODE: NONHSAT056090.2,

URS000030446C_9606 lncRNA 2270 1

LNCipedia: LINC02080:5,

LINC02080 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02080 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02080 Gene

No ASD Table

Relevant External Links for LINC02080 Gene

GeneLoc Exon Structure for
LINC02080

Expression for LINC02080 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02080 Gene

Orthologs for LINC02080 Gene

Evolution for LINC02080 Gene

ENSEMBL:
Gene Tree for LINC02080 (if available)
TreeFam:
Gene Tree for LINC02080 (if available)

No data available for Orthologs for LINC02080 Gene

Paralogs for LINC02080 Gene

No data available for Paralogs for LINC02080 Gene

Variants for LINC02080 Gene

Additional dbSNP identifiers (rs#s) for LINC02080 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC02080 Gene

Variant ID Type Subtype PubMed ID
nsv1059991 CNV loss 25217958
nsv833550 CNV loss 17160897

Additional Variant Information for LINC02080 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02080

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC02080 Gene

Disorders for LINC02080 Gene

Additional Disease Information for LINC02080

No disorders were found for LINC02080 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02080 Gene

Publications for LINC02080 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

Products for LINC02080 Gene

Sources for LINC02080 Gene