Aliases for LINC02080 Gene

Data sources for LINC02080 Gene:

Subcategory (RNA class) for LINC02080 Gene


Aliases for LINC02080 Gene

External Ids for LINC02080 Gene

Summaries for LINC02080 Gene

GeneCards Summary for LINC02080 Gene

LINC02080 (Long Intergenic Non-Protein Coding RNA 2080) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02080 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02080 Gene

Genomics for LINC02080 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02080 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J076797 Enhancer 0.3 Ensembl 250.7 -1.4 -1443 0.8 SP1 LINC02080 UNC13D MFSD11 HSALNG0118876 lnc-MFSD11-1 SRSF2 MGAT5B
GH17J076816 Enhancer 0.8 Ensembl ENCODE 7.4 +17.8 17758 0.8 CTCF REST TRIM22 SMC3 RAD21 BHLHE40 ZBTB48 RB1 ZNF143 GLIS1 LINC02080 MXRA7 piR-53063-083 LOC107985089 MGAT5B SRSF2
GH17J076819 Enhancer 0.6 Ensembl 6.5 +21.3 21258 1 ZIC2 EBF1 RB1 GLIS1 RCOR1 CTCF YBX1 TCF12 GATAD2B ZNF423 LINC02080 LOC107985089 piR-53063-083 MGAT5B SRSF2
GH17J076719 Enhancer 0.3 dbSUPER 5.6 -78.6 -78600 0.7 PRDM6 ENSG00000274051 MXRA7 LINC02080 piR-47255 lnc-MXRA7-1 JMJD6 METTL23 SNHG16
GH17J076805 Enhancer 0.2 Ensembl 0.4 +6.4 6358 0.4 piR-53063-083 RNU6-97P MFSD11 LINC02080 MGAT5B SRSF2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02080 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02080 Gene

Latest Assembly
24,012 bases
Plus strand

Previous Assembly
(GRCh37/hg19 by Entrez Gene)
8,059 bases
Plus strand

(GRCh37/hg19 by Ensembl)
6,910 bases
Plus strand

Genomic View for LINC02080 Gene

Genes around LINC02080 on UCSC Golden Path with GeneCards custom track
LINC02080 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC02080 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02080 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02080 Gene

Proteins for LINC02080 Gene

Post-translational modifications for LINC02080 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02080 Gene

Domains & Families for LINC02080 Gene

Gene Families for LINC02080 Gene

genes like me logo Genes that share domains with LINC02080: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02080 Gene

Function for LINC02080 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02080 Gene

Localization for LINC02080 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02080 Gene

Pathways & Interactions for LINC02080 Gene

PathCards logo

SuperPathways for LINC02080 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02080 Gene


No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02080 Gene

Drugs & Compounds for LINC02080 Gene

No Compound Related Data Available

Transcripts for LINC02080 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02080 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075AB8C_9606 lncRNA 3088 4

RefSeq: NR_110837,

Ensembl: ENST00000585863 (view in UCSC) ,

LNCipedia: LINC02080:6,


URS00008B23E7_9606 lncRNA 758 2

LNCipedia: LINC02080:7,


URS000030446C_9606 lncRNA 2270 1

LNCipedia: LINC02080:5,

LINC02080 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02080 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02080 Gene

No ASD Table

Relevant External Links for LINC02080 Gene

GeneLoc Exon Structure for

Expression for LINC02080 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02080 Gene

Orthologs for LINC02080 Gene

Evolution for LINC02080 Gene

Gene Tree for LINC02080 (if available)
Gene Tree for LINC02080 (if available)

No data available for Orthologs for LINC02080 Gene

Paralogs for LINC02080 Gene

No data available for Paralogs for LINC02080 Gene

Variants for LINC02080 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC02080 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LINC02080 Gene

Variant ID Type Subtype PubMed ID
nsv1059991 CNV loss 25217958
nsv833550 CNV loss 17160897

Additional Variant Information for LINC02080 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC02080 Gene

Disorders for LINC02080 Gene

Additional Disease Information for LINC02080

No disorders were found for LINC02080 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02080 Gene

Publications for LINC02080 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

Products for LINC02080 Gene

Sources for LINC02080 Gene