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Aliases for LINC02080 Gene
Subcategory (RNA class) for LINC02080 Gene
lncRNA
Aliases for LINC02080 Gene
External Ids for LINC02080 Gene
- HGNC: 52928
- NCBI Entrez Gene: 101928514
- Ensembl: ENSG00000267065
Summaries for LINC02080 Gene
GeneCards Summary for LINC02080 Gene
LINC02080 (Long Intergenic Non-Protein Coding RNA 2080) is an RNA Gene, and is affiliated with the lncRNA class.
Additional gene information for LINC02080 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02080 Gene
Genomics for LINC02080 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for LINC02080 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH17J076797 | Enhancer | 0.3 | Ensembl | 250.7 | -1.4 | -1443 | 0.8 | SP1 | LINC02080 UNC13D MFSD11 HSALNG0118876 lnc-MFSD11-1 SRSF2 MGAT5B | |
| GH17J076816 | Enhancer | 0.8 | Ensembl ENCODE | 7.4 | +17.8 | 17758 | 0.8 | CTCF REST TRIM22 SMC3 RAD21 BHLHE40 ZBTB48 RB1 ZNF143 GLIS1 | LINC02080 MXRA7 piR-53063-083 LOC107985089 MGAT5B SRSF2 | |
| GH17J076819 | Enhancer | 0.6 | Ensembl | 6.5 | +21.3 | 21258 | 1 | ZIC2 EBF1 RB1 GLIS1 RCOR1 CTCF YBX1 TCF12 GATAD2B ZNF423 | LINC02080 LOC107985089 piR-53063-083 MGAT5B SRSF2 | |
| GH17J076719 | Enhancer | 0.3 | dbSUPER | 5.6 | -78.6 | -78600 | 0.7 | PRDM6 | ENSG00000274051 MXRA7 LINC02080 piR-47255 lnc-MXRA7-1 JMJD6 METTL23 SNHG16 | |
| GH17J076805 | Enhancer | 0.2 | Ensembl | 0.4 | +6.4 | 6358 | 0.4 | piR-53063-083 RNU6-97P MFSD11 LINC02080 MGAT5B SRSF2 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LINC02080 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for LINC02080 Gene
Latest Assembly
- chr17:76,799,043-76,823,054
- (GRCh38/hg38)
- Size:
- 24,012 bases
- Orientation:
- Plus strand
Previous Assembly
- chr17:74,795,126-74,803,184
- (GRCh37/hg19 by Entrez Gene)
- Size:
- 8,059 bases
- Orientation:
- Plus strand
- chr17:74,795,126-74,802,035
- (GRCh37/hg19 by Ensembl)
- Size:
- 6,910 bases
- Orientation:
- Plus strand
Genomic View for LINC02080 Gene
Genes around LINC02080 on UCSC Golden Path with GeneCards custom track
LINC02080 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
- Cytogenetic band:
-
- 17q25.1-q25.2 by HGNC
- 17q25.1-q25.2 by Entrez Gene
- 17q25.1 by Ensembl
LINC02080 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LINC02080 Gene
Proteins for LINC02080 Gene
Post-translational modifications for LINC02080 Gene
No Post-translational modifications
No data available for DME Specific Peptides for LINC02080 Gene
Domains & Families for LINC02080 Gene
Gene Families for LINC02080 Gene
No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02080 Gene
Function for LINC02080 Gene
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Cell Lines for research
No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02080 Gene
Localization for LINC02080 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02080 Gene
Transcripts for LINC02080 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02080 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS000075AB8C_9606 | lncRNA | 3088 | 4 |
RefSeq: NR_110837, Ensembl: ENST00000585863 (view in UCSC) , LNCipedia: LINC02080:6, NONCODE: NONHSAT175637.1, |
| URS00008B23E7_9606 | lncRNA | 758 | 2 |
LNCipedia: LINC02080:7, NONCODE: NONHSAT056090.2, |
| URS000030446C_9606 | lncRNA | 2270 | 1 |
LNCipedia: LINC02080:5, |
LINC02080 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for LINC02080 Gene
- 1 NCBI additional mRNA sequence :
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Relevant External Links for LINC02080 Gene
- GeneLoc Exon Structure for
- LINC02080
Expression for LINC02080 Gene
No Expression Related Data Available
No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02080 Gene
Orthologs for LINC02080 Gene
No data available for Orthologs for LINC02080 Gene
Paralogs for LINC02080 Gene
No data available for Paralogs for LINC02080 Gene
Variants for LINC02080 Gene
All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| nsv1059991 | CNV | loss | 25217958 |
| nsv833550 | CNV | loss | 17160897 |
Additional Variant Information for LINC02080 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- LINC02080
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC02080 Gene
Disorders for LINC02080 Gene
Additional Disease Information for LINC02080
No disorders were found for LINC02080 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02080 Gene
Publications for LINC02080 Gene
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
Products for LINC02080 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LINC02080
- Origene Custom Protein Services for LINC02080
- Browse OriGene Inhibitory RNA Products For LINC02080
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for LINC02080
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For LINC02080
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for LINC02080
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for LINC02080
- Search GeneCopoeia for miRNA 3'UTR Target clone products for LINC02080
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for LINC02080
Sources for LINC02080 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM® (Updated: 05-Mar-2021)
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) MedlinePlus Genetics
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNAcentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Open Targets Platform
- (175) 5SRRNADB
- (176) snoDB
- (177) MirGeneDB